Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j21f
         (593 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119260-1|AAM51120.1|  278|Drosophila melanogaster SD22712p pro...   137   1e-32
AE014297-3163|AAF56005.1|  278|Drosophila melanogaster CG5377-PA...   137   1e-32
AY047560-1|AAK77292.1|  524|Drosophila melanogaster GH07444p pro...    33   0.29 
AE014296-809|AAF47872.1|  524|Drosophila melanogaster CG1309-PA ...    33   0.29 
BT003480-1|AAO39483.1|  853|Drosophila melanogaster RE58242p pro...    29   6.3  
AE014298-1852|AAF48232.2|  853|Drosophila melanogaster CG32645-P...    29   6.3  
X04813-1|CAA28502.1| 2236|Drosophila melanogaster protein ( Dros...    28   8.3  
X03875-1|CAA27509.1|  414|Drosophila melanogaster protein ( D. m...    28   8.3  

>AY119260-1|AAM51120.1|  278|Drosophila melanogaster SD22712p
           protein.
          Length = 278

 Score =  137 bits (331), Expect = 1e-32
 Identities = 58/114 (50%), Positives = 86/114 (75%), Gaps = 2/114 (1%)
 Frame = +1

Query: 253 EEKVKVSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDK--NDFTLVAWDPPG 426
           E KV+V+G ++N V+ G G  +L+ +PGALG+ WTD++PQIE + K     T++AWDPPG
Sbjct: 23  ERKVRVNGSDLNIVESGSGERSLLLMPGALGSSWTDFRPQIEQLPKLLPGHTIIAWDPPG 82

Query: 427 YGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKY 588
           YGKS PP ++F ++F+ +DA  A + M+AL+ P++SILGWSDGGIT +I A ++
Sbjct: 83  YGKSVPPQRKFGLEFFREDAQAAVDLMRALDRPRFSILGWSDGGITALIVAGRH 136


>AE014297-3163|AAF56005.1|  278|Drosophila melanogaster CG5377-PA
           protein.
          Length = 278

 Score =  137 bits (331), Expect = 1e-32
 Identities = 58/114 (50%), Positives = 86/114 (75%), Gaps = 2/114 (1%)
 Frame = +1

Query: 253 EEKVKVSGCNINYVKVGKGSHNLICLPGALGTIWTDYKPQIEGIDK--NDFTLVAWDPPG 426
           E KV+V+G ++N V+ G G  +L+ +PGALG+ WTD++PQIE + K     T++AWDPPG
Sbjct: 23  ERKVRVNGSDLNIVESGSGERSLLLMPGALGSSWTDFRPQIEQLPKLLPGHTIIAWDPPG 82

Query: 427 YGKSRPPMKQFDVDFYEKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKY 588
           YGKS PP ++F ++F+ +DA  A + M+AL+ P++SILGWSDGGIT +I A ++
Sbjct: 83  YGKSVPPQRKFGLEFFREDAQAAVDLMRALDRPRFSILGWSDGGITALIVAGRH 136


>AY047560-1|AAK77292.1|  524|Drosophila melanogaster GH07444p
           protein.
          Length = 524

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = +1

Query: 298 VGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGY-GKSRPPMKQFDVDFY 474
           VG G   +IC  G  G            +    ++++ W+ PG+ G +  P    D +  
Sbjct: 239 VGNGKTLVICSEGNAGFYEVGIMATPVALK---YSVLGWNHPGFAGSTGTPHPHQDKNAI 295

Query: 475 EKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKYP 591
           +    +A N ++   +    + GWS GG + +  A+ YP
Sbjct: 296 DAVVQFAINNLR-FPVEDIILYGWSIGGFSTLYAASVYP 333


>AE014296-809|AAF47872.1|  524|Drosophila melanogaster CG1309-PA
           protein.
          Length = 524

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
 Frame = +1

Query: 298 VGKGSHNLICLPGALGTIWTDYKPQIEGIDKNDFTLVAWDPPGY-GKSRPPMKQFDVDFY 474
           VG G   +IC  G  G            +    ++++ W+ PG+ G +  P    D +  
Sbjct: 239 VGNGKTLVICSEGNAGFYEVGIMATPVALK---YSVLGWNHPGFAGSTGTPHPHQDKNAI 295

Query: 475 EKDADYAFNFMKALNIPKYSILGWSDGGITGIIHAAKYP 591
           +    +A N ++   +    + GWS GG + +  A+ YP
Sbjct: 296 DAVVQFAINNLR-FPVEDIILYGWSIGGFSTLYAASVYP 333


>BT003480-1|AAO39483.1|  853|Drosophila melanogaster RE58242p
           protein.
          Length = 853

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 462 IKLLHRRSTFTIAWWIPCH*CKIIFVYSFNL 370
           I  +H    F++AW I  H C ++F YS N+
Sbjct: 445 IPCIHGLRAFSMAWVILGHTCIVVFKYSDNM 475


>AE014298-1852|AAF48232.2|  853|Drosophila melanogaster CG32645-PB
           protein.
          Length = 853

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 462 IKLLHRRSTFTIAWWIPCH*CKIIFVYSFNL 370
           I  +H    F++AW I  H C ++F YS N+
Sbjct: 445 IPCIHGLRAFSMAWVILGHTCIVVFKYSDNM 475


>X04813-1|CAA28502.1| 2236|Drosophila melanogaster protein (
           Drosophila melanogasterrudimentary gene. ).
          Length = 2236

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 KVSGCNINYVKVGKGSHNLICLPGALG 345
           K  GC+   +K+G   HNL CL  A G
Sbjct: 282 KAIGCSTYKMKIGNRGHNLPCLHRATG 308


>X03875-1|CAA27509.1|  414|Drosophila melanogaster protein ( D.
           melanogaster rudimentarygene 5'-flank, exons 1 and 2
           (partial)  coding for carbanylphosphate synthetase (EC
           2.7.2.9), aspartate  transcarbamylase(EC 2.1.3.2) and
           dihydro-orotase (EC 3.5.2.3).  ).
          Length = 414

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 KVSGCNINYVKVGKGSHNLICLPGALG 345
           K  GC+   +K+G   HNL CL  A G
Sbjct: 280 KAIGCSTYKMKIGNRGHNLPCLHRATG 306


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,766,779
Number of Sequences: 53049
Number of extensions: 487635
Number of successful extensions: 1173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)