Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j19f
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 40 2e-04
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 40 3e-04
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 32 0.062
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 32 0.062
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 32 0.083
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 31 0.11
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 31 0.19
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 29 0.44
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 29 0.44
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 28 1.3
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 27 1.8
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 27 2.3
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 2.3
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 26 4.1
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 26 5.4
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 26 5.4
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 7.2
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 7.2
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 40.3 bits (90), Expect = 2e-04
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 4/186 (2%)
Frame = +3
Query: 105 VVFGAMLLLSSL-IGVYFAFFASKKQNTTSEYL-MGGKTMGMFPISMSLIASYISGISLL 278
+V G L ++L I V ++ +N TSE+ ++ ++ ++++S+ +LL
Sbjct: 14 IVVGLGLGFAALMIFVSWSLKKFNNENQTSEHFNTASHSVRTGLVASAVVSSWTWASTLL 73
Query: 279 GLPAEMYTYGTQLWTIVLSEWAVSLTI-AIIYLPVFYNLQITSTY-EYLRLRFNQKVRLL 452
+ Y YG S V + + ++ + + T+ E +R R +
Sbjct: 74 TSAQKTYQYGVSGAFWYASGACVQILLFTVLAIELKRKAPNAHTFLEVVRARCGPIAHGV 133
Query: 453 GSVIFIIKMLLYIPIVIYVPALAFSQVTGVNLHLITPIVCIVCIFYTTLGGIKAVVWTDT 632
V I +L + +++ + S VTG+N + ++ + I YT GGIKA TD
Sbjct: 134 FLVFAYITNILVMAMLLCGGSATISSVTGMNTVAVCFLLPVGVIIYTMFGGIKATFLTDY 193
Query: 633 LQTVLM 650
+ TV++
Sbjct: 194 IHTVII 199
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 39.9 bits (89), Expect = 3e-04
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 3/181 (1%)
Frame = +3
Query: 117 AMLLLSSLIGVYFAFFASKKQNTTSEYLMGGKTMGMFPISMSLIASYISGISLLGLPAEM 296
A LL ++I + QN+ + +++ IS S ++++ +LL A
Sbjct: 20 AFALLMAIITKVLTACMGQTQNS-ERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWS 78
Query: 297 YTYGTQLWTIVLSEWAVSLTIAIIYLPVFYNLQITSTY---EYLRLRFNQKVRLLGSVIF 467
YTYG + + +T+ ++L + + + + E +RF + +
Sbjct: 79 YTYGIMGGFMYGVGGTIQITL-FLFLAIQIKKKAPAAHTVSECFFIRFGKLGHCVYLFYC 137
Query: 468 IIKMLLYIPIVIYVPALAFSQVTGVNLHLITPIVCIVCIFYTTLGGIKAVVWTDTLQTVL 647
I +L +++ + FS TG+N ++ + + YTTLGG+KA +D + TV+
Sbjct: 138 ISTNVLVSSLLLLGGSQGFSSTTGMNTVAACFLLPLGVMVYTTLGGLKATFISDWIHTVM 197
Query: 648 M 650
+
Sbjct: 198 I 198
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 32.3 bits (70), Expect = 0.062
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Frame = +3
Query: 303 YGTQLWTIVLSEWAVSLTIAIIYLPVFYNLQITSTYEYLRLRFNQKVRLLGSVIFIIK-- 476
YG WT+ W + T+A+I+L FY + + + + + V+++ +F I+
Sbjct: 105 YGAAEWTL-FGFWCLVCTLALIFLTYFYETWVKAV-KVTVISLAKCVKVISIGLFNIRRE 162
Query: 477 MLLYIPIV-IYVPALAFSQVTGVNLHLITPIVCIVCIFYTTL 599
M++ I I+ + + + F + +L L ++C C L
Sbjct: 163 MMIIIWILWLIICCILFVYIKSGDLILNKALICSTCTISAVL 204
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 32.3 bits (70), Expect = 0.062
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +3
Query: 90 DWLDYVVFGAMLLLSSLIGVYFAFFASKKQNTTSE---YLMGGKTMGMFPISMSLIASYI 260
+W ++ G +L+L ++F FF+S K T+E +++ + GM P S+S+ S++
Sbjct: 23 NWKTWIKHGILLILVLSTVIFFYFFSSHKSKGTNEKPKFVIMMVSDGMGPGSLSMTRSFV 82
Query: 261 SGIS 272
++
Sbjct: 83 ETLN 86
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 31.9 bits (69), Expect = 0.083
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 375 PVFYNLQITSTY-EYLRLRFNQKVRLLGSVIFIIKMLLYIPIVIYVPALAFSQVTGVNL 548
PVF N Q + E LRL N+ R+ + + +LL +P+ +Y AF V ++L
Sbjct: 21 PVFLNEQDQDAFVEQLRLTNNRDNRMFSIIFSFLYLLLIVPLFLYPEYWAFKLVELLSL 79
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 31.5 bits (68), Expect = 0.11
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Frame = +3
Query: 168 SKKQNTTSEYLMGGKTMGMFPISMSLIASYISGISLLGLPAEMY---------TYGTQLW 320
S NT E T P+ + L+ S+ S I L PA Y YG W
Sbjct: 52 SNSPNTHRENNPSRSTDNSSPLLIKLLISFTS-IILFNAPAVCYLKYKDAFFKNYGAAEW 110
Query: 321 TIVLSEWAVSLTIAIIYLPVFY 386
T+ W + T+A+I+L FY
Sbjct: 111 TL-FGFWCLVCTLALIFLTYFY 131
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 467 YNQNVALYTNCNLRSCSGVQSSNRCKPSLDNTNCLH 574
YN TNCN C S++ C LD CLH
Sbjct: 237 YNGTPRGATNCNEGGCPRCNSASSCGKELDTCLCLH 272
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 41 LVQSSSLELHHDDSILRLARLRSIWRYVALIVLNRRVLRVF 163
+V S+S+ + DD ILRL RL W + L+ VL F
Sbjct: 120 IVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAF 160
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 29.5 bits (63), Expect = 0.44
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Frame = +3
Query: 180 NTTSEYLMGGKTMGMFPISMSLIASYISGISLLGLPAEMY---------TYGTQLWTIVL 332
NT E G T P+ + L+ S+ S I L P Y YG WT+
Sbjct: 56 NTHRENHSYGTTDNSSPLLIILLISFTS-IILFNAPEVCYLKYKDAFFKNYGAAEWTL-F 113
Query: 333 SEWAVSLTIAIIYLPVFY 386
W + T+A+I+L FY
Sbjct: 114 GFWCLVCTLALIFLTYFY 131
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +3
Query: 303 YGTQLWTIVLSEWAVSLTIAIIYLPVFYNLQITSTYEYLRLRFNQKVRLLGSVIFIIKML 482
YG WT+ W + T+A+I+L FY + +N + + + +I L
Sbjct: 105 YGAAEWTL-FGFWCLVCTLALIFLTYFYETWTKAVKVTAVGLYNSRKKWV-----VIIWL 158
Query: 483 LYIPIVIYVPALAFSQVTGVNLHLITPIVCIVC 581
L++ ++ +V F + NL+L ++C C
Sbjct: 159 LWV-VICFV---LFGCIKFGNLNLDKALICSTC 187
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/69 (23%), Positives = 36/69 (52%)
Frame = +3
Query: 219 GMFPISMSLIASYISGISLLGLPAEMYTYGTQLWTIVLSEWAVSLTIAIIYLPVFYNLQI 398
G+ +S+++++S +S +S +G+ ++ Y + + W V L + ++YN I
Sbjct: 389 GVHTLSLAVVSSLLSAVSGMGI-GKLKNYRYPM----IGGWIVLLAGTGSMIAIYYNTDI 443
Query: 399 TSTYEYLRL 425
+ T +L L
Sbjct: 444 SRTMGFLAL 452
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = +2
Query: 293 DVHVWYTIVDNSFVRV--------GSIAHNCNNLLASILQFTNHINL*VSK 421
++H W +I N + RV + H C N + SILQF N N+ K
Sbjct: 96 NLHYWESIDKNWYSRVLFLIQSFPTRLYHICRNSIKSILQFQNFSNIFAKK 146
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 2.3
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Frame = +3
Query: 237 MSLIASYISGISLLGLPAEMYTYG-TQLWTIVLSEWAVSLTIAIIYLPVFYNLQITSTYE 413
+++ ASY+ GI L L YT+G T+ W +S + + + +N+ Y
Sbjct: 293 IAMFASYVYGILYLVLTTIPYTFGMTKNWQGTISTLPMIAMFTGVVIGGSFNIMWNQRYA 352
Query: 414 YLRLRFNQKVRLLGSVIFIIKMLLYIPIVIYVPALAFSQVTGVNLHLITPIVCI 575
L K + ++ + +P I+V F+ N+H I P + I
Sbjct: 353 KLITANGGKPLPEQRLPLMMAVGWLMPAGIFV----FAWTNSPNIHWIAPFIGI 402
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 309 TQLWTIVLSEWAVSLTIAIIYLPVFYNLQITSTYEYLRLRFNQKVRL 449
TQ+ +L++ A++ I + LP YN +I T ++RLR ++V L
Sbjct: 50 TQIPEDILNDKAINEAIKL--LPQNYNFEIHKTIWHIRLRKAKRVAL 94
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/99 (22%), Positives = 38/99 (38%)
Frame = +3
Query: 96 LDYVVFGAMLLLSSLIGVYFAFFASKKQNTTSEYLMGGKTMGMFPISMSLIASYISGISL 275
L ++F L + +L F + T S+ + P ++ IA+ IS +
Sbjct: 61 LGKIIFIFQLSILTLYICCITFRFIRYPGTLSKTWKNPSEVLFMPTALLAIATSISNLYP 120
Query: 276 LGLPAEMYTYGTQLWTIVLSEWAVSLTIAIIYLPVFYNL 392
P YT +W I + W I + +FY+L
Sbjct: 121 YAFP---YTGEWMVWLIRILYWIFVAVACIFVISLFYSL 156
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.4
Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Frame = +3
Query: 231 ISMSLIASYISGISLLGLPAEMYTYGT--QLWTIVLSEWAVSLTI-AIIYLPVFYNLQIT 401
IS ++++S+ +LL Y YG +W + V +T +I L V
Sbjct: 58 ISSAVVSSWTWPGTLLTSAGMAYEYGVCGSMWYSFA--FTVQITFFTVIALQVKRVAPGA 115
Query: 402 STY-EYLRLRFNQKVRLLGSVIFIIKMLLYIPIVIYVPALAFSQVTGVNLHLITPIVCIV 578
T E ++ RF Q + + ++ +++ + A S +TG+++ ++ +
Sbjct: 116 HTIVEIVKARFGQASHAVFLFYALGTNIIVSAMLLLGGSQAISAITGMHVVAAGFLLPLG 175
Query: 579 CIFYTTLGGIKAVVWTDTLQTVLM 650
YT GG+K+ +D TV++
Sbjct: 176 VWLYTVSGGLKSTFLSDWTHTVIV 199
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 14 KCHSGRTRDLVQSSSLELHHDDSILRLARLRSIWRY 121
K H G + D VQSS + D IL L R WRY
Sbjct: 66 KLHKG-SDDSVQSSIRKRGIDAGILELERQTPRWRY 100
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 90 DWLDYVVFGAMLLLSSLIG 146
DW+D+ V A+LLL++ +G
Sbjct: 226 DWVDFGVICALLLLNATVG 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,880
Number of Sequences: 5004
Number of extensions: 57080
Number of successful extensions: 186
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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