Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j19f
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960 31 0.60
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 30 1.8
03_03_0250 - 15845079-15845345,15846303-15846397,15846563-158466... 29 3.2
12_02_0357 + 17941898-17943691 29 4.2
07_03_0773 - 21387606-21387878,21387965-21388121,21388202-213884... 29 4.2
09_04_0754 - 19946423-19947061,19947315-19947429,19947509-199475... 28 5.6
07_03_0767 - 21360999-21361157,21361185-21361274,21361413-213615... 28 5.6
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109... 28 5.6
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 28 5.6
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119... 28 5.6
01_06_0125 + 26711157-26713297,26715026-26715206 28 7.4
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 27 9.8
>10_08_1064 + 22636603-22636785,22636901-22637671,22637749-22638960
Length = 721
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/80 (18%), Positives = 40/80 (50%)
Frame = +3
Query: 411 EYLRLRFNQKVRLLGSVIFIIKMLLYIPIVIYVPALAFSQVTGVNLHLITPIVCIVCIFY 590
E +R R+ L+ ++ ++ +++ + + +TGVN++ + ++ + + Y
Sbjct: 152 EIVRARWGTPAHLVFLTFCLLTNVIVTAMLLLGGSAVVNALTGVNVYAASFLIPLGVVVY 211
Query: 591 TTLGGIKAVVWTDTLQTVLM 650
T GG+KA + +V++
Sbjct: 212 TLAGGLKATFLASYIHSVVV 231
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 276 LGLPAEMYTYGT-QLWTIVLSEWAVSLTIAIIYLPV 380
L LPA Y+ G LW V W ++ II LPV
Sbjct: 610 LSLPARRYSLGYFTLWAAVAIAWGTVGSVVIILLPV 645
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 301 VYISAGKPSSDIPEM*LAISDIEIGNIPIVFPPIKYSEVVFCFLLA 164
V++S G P +A++ + +P +FP I+Y V C+ +A
Sbjct: 380 VFLSDGIPDQFAVAGYVALAALSTALVPRIFPQIRYHHVAVCYAVA 425
>03_03_0250 -
15845079-15845345,15846303-15846397,15846563-15846671,
15846981-15847059,15847286-15847355,15847632-15847730,
15847906-15847930
Length = 247
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 650 HQNRL*RISPYNCLYSTKSCVKYTDNANNWCYQVKVYTGYLTERQSRNVNYNW 492
H +L + S + C + K+ DN + Y ++ GY+ R SR W
Sbjct: 24 HYEKLLQTSTHKCFFKVKAMNSSFDNCDETFY--RIVLGYIYRRASRESTGQW 74
>12_02_0357 + 17941898-17943691
Length = 597
Score = 28.7 bits (61), Expect = 4.2
Identities = 24/95 (25%), Positives = 39/95 (41%)
Frame = +3
Query: 225 FPISMSLIASYISGISLLGLPAEMYTYGTQLWTIVLSEWAVSLTIAIIYLPVFYNLQITS 404
FP S ++ + G +GL +YT QL+ + + A SL + I +LP +
Sbjct: 151 FPESRGIVIGLLKGF--VGLSGAIYT---QLYLAIYGDDAKSLVLLIAWLPAAVYIFFVH 205
Query: 405 TYEYLRLRFNQKVRLLGSVIFIIKMLLYIPIVIYV 509
T L R L S F + + I + Y+
Sbjct: 206 TIRVLPYRRRGDGEELDSKPFFCFLYISIALAAYL 240
>07_03_0773 -
21387606-21387878,21387965-21388121,21388202-21388439,
21388522-21388729,21390046-21390201,21390414-21391211
Length = 609
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 515 SGVQSSNRCKPSLDNTNCLHCLYILHNSWW 604
S + S +C P L C CL L WW
Sbjct: 193 SNIYSMAQCSPDLSPAQCRSCLDGLVGQWW 222
>09_04_0754 -
19946423-19947061,19947315-19947429,19947509-19947587,
19947863-19948007
Length = 325
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 193 SEVVFCFLLAKNAKYTPIKDDKSNIAPNTT*SSQSK 86
SEV + + K + YTP+K+ + AP T ++ SK
Sbjct: 161 SEVTTAYKMDKRSSYTPLKNIQQLAAPTTKSTAASK 196
>07_03_0767 -
21360999-21361157,21361185-21361274,21361413-21361563,
21361650-21361887,21361984-21362191,21362442-21362462,
21363884-21364011,21364108-21364245,21364820-21365654
Length = 655
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 515 SGVQSSNRCKPSLDNTNCLHCLYILHNSWWN 607
S + S +C P+L C CL L WW+
Sbjct: 194 SDIYSMAQCSPALSRPLCRSCLDGLVGQWWD 224
>07_01_0154 -
1094256-1094672,1094954-1094977,1095867-1095891,
1096014-1096304,1096391-1096470,1096953-1097052,
1097143-1097204,1097650-1097750,1097940-1098117,
1098298-1098924,1099014-1099100,1099804-1099905,
1100265-1100348,1100580-1100657
Length = 751
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 271 HYSAYLLRCTRMVHNCGQ*FCPSGQYRSQLQ 363
H + YLLRC R+V C F Y ++++
Sbjct: 493 HCAQYLLRCLRLVTQCWHSFTDDSIYEAKIE 523
>01_06_1783 +
39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 306 GTQLW--TIVLSEWAVSLTIAIIYLPVFYNLQITSTYEYLRLRFNQKVRL 449
G + W T+V+S A+ LT+ +I L V +L S +EYL +R + +L
Sbjct: 558 GIRRWLSTVVVSVVALVLTLVVISLSVGSSLTGASLHEYLFVRPSDSSKL 607
>01_01_0132 -
1197988-1198206,1198255-1198356,1198518-1198821,
1199221-1199292,1199384-1199420,1199527-1199585,
1199844-1200128,1200293-1200465,1201020-1201213,
1202245-1202374
Length = 524
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +3
Query: 177 QNTTSEYLMGGKTMGMFPISMSLIASYISGISLLGLPAEMYTYGTQLWTIVLSEWAVSLT 356
Q T+ Y K + +++ IA+ + ++ LG E+Y + ++ V W V T
Sbjct: 245 QKTSENYRRIRKVLHNLSVALICIAALMPVLAFLGYVLELYGQRSTVYVFVTLCWTVVAT 304
Query: 357 IAII 368
+ I+
Sbjct: 305 LFIL 308
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 651 TSEPFVAYQSIQLPLFHQELCKIYRQCKQLVLSSEG 544
T+ +A + L Q LC +YRQ K +++S+EG
Sbjct: 664 TAAHMIASLRGNMELSMQALCALYRQRKLVIMSTEG 699
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 253 LAISDIEIGNIPIVFPPIKYSEVVFCFLLA 164
+ ++ I +PI+FP +K+ V+ C+ LA
Sbjct: 416 IVLAAISTVAVPIIFPQLKWYLVLVCYFLA 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,728
Number of Sequences: 37544
Number of extensions: 326124
Number of successful extensions: 874
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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