Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j19f
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   0.84 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 509 SCSGVQSSNRCKPSLDNTNCLH 574
           SCS V SS++C+ S     C++
Sbjct: 112 SCSNVDSSDKCEKSFMFMKCMY 133


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 393 VNCRILASKLLQL*AILPTRTKLLSTIVYHT 301
           V+  ++   L  L + L TRTKL  T  +HT
Sbjct: 13  VSSCVIFGVLFVLFSFLRTRTKLQPTYFHHT 43


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 393 VNCRILASKLLQL*AILPTRTKLLSTIVYHT 301
           V+  ++   L  L + L TRTKL  T  +HT
Sbjct: 13  VSSCVIFGVLFVLFSFLRTRTKLQPTYFHHT 43


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 384 YNLQITSTYEYLRLRFNQKVRLLGSVIFIIKMLLYIPIVIY 506
           YN    + Y Y    +N   +L  ++ +I ++ + +P+ IY
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVPIY 136


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -2

Query: 608 YSTKSCVKYTDNANNWCY 555
           Y T  CV+Y      W Y
Sbjct: 715 YETDPCVRYYPRRKEWLY 732


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 VRVGSIAHNCNNLLASILQFTN 397
           +R   I +NC +L+AS+  F N
Sbjct: 438 LREDVINYNCRSLVASVPFFAN 459


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 VRVGSIAHNCNNLLASILQFTN 397
           +R   I +NC +L+AS+  F N
Sbjct: 406 LREDVINYNCRSLVASVPFFAN 427


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 218 HCLPAHQIFGSSVLLLTREK 159
           +C+P  Q+  S++L   REK
Sbjct: 794 YCVPVPQVNDSTILSPVREK 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,460
Number of Sequences: 438
Number of extensions: 4125
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)