Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j18r
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   205   6e-54
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   3.7  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    27   3.7  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   6.4  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    26   6.4  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   6.4  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.4  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.5  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  205 bits (500), Expect = 6e-54
 Identities = 108/182 (59%), Positives = 129/182 (70%), Gaps = 2/182 (1%)
 Frame = -1

Query: 735 IQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKE 556
           IQAAK+LE++ GIHCNLTLLFS  QA+ACAEANVTLISPFVGRILD+Y     + Y  +E
Sbjct: 140 IQAAKQLEEE-GIHCNLTLLFSFVQAVACAEANVTLISPFVGRILDFYKAKNNRDYTAQE 198

Query: 555 DPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXX 376
           DPGVVSV+ I+NYYKKFGYKT VMGASFRN GEI+ELAG D LTISP LL++L +S    
Sbjct: 199 DPGVVSVSNIFNYYKKFGYKTIVMGASFRNVGEIKELAGVDFLTISPALLEQLNNSTDAV 258

Query: 375 XXXXXXXXXXLNDIEKIS-LT-ESEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIKT 202
                       ++EK+S LT E +FR+  N D MA  KLS GI  FA D   L +++K 
Sbjct: 259 PKKLDASKASSLNLEKVSYLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDADTLRTILKA 318

Query: 201 LL 196
            L
Sbjct: 319 KL 320


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 705 HGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEG 562
           H +  NL    +LY    C  AN+ + +PF      +++EH    Y+G
Sbjct: 110 HELSHNLGFKKTLYNRAYCLFANLPVGAPFAASFRPYHMEH--HAYQG 155


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 702 GIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKEDPGVV 541
           GI C   L FSL  A+  +EA+V     F+  IL    E        ++D GVV
Sbjct: 152 GIKCESILCFSLLTALLDSEADVIEFGDFLISIL----ESDGAVVNSEDDEGVV 201


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 312 SEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIKTLL 196
           S+F+W  N ++  +  + D  R    + RK++ +IK ++
Sbjct: 190 SKFKWDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIKDVM 228


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 585 HTKKTYEGKEDPGVVSVTKIYNYYKKFGYK 496
           HT  T EG+E+ G VS T + + ++    K
Sbjct: 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLK 330


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 317 VSDIFSMSFKAANFGSRTFFSG-LSLLAN 400
           +SDI S S K AN  S+  FSG L+  AN
Sbjct: 173 LSDISSSSMKKANNSSKPLFSGKLTFKAN 201


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 554  SSLPS*VFFVCSTYQSNIRPTNGDISVTFASAQAIAWYKENNSVR 688
            SS+ S   FVC       +P     S++  S    + +K NNS+R
Sbjct: 868  SSINSKEAFVCLDRSKESKPIESCFSLSIQSVYMQSQFKYNNSIR 912


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 531 KIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASS 388
           +I+    + G+   + GA    +G I  + G D+L   P+L+  L +S
Sbjct: 701 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,990
Number of Sequences: 5004
Number of extensions: 59706
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)