Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j18r
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    80   2e-15
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115...    30   1.7  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    28   8.8  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
 Frame = -1

Query: 735 IQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-----KKT 571
           I+A++ LE + GI  +LT ++S  QA A A+A  +++  FVGR+ DW   H+      + 
Sbjct: 204 IEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGASVVQIFVGRVRDWARTHSGDPEIDEA 262

Query: 570 YEGKEDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELAS 391
            +  ED G+    K+Y Y  K GYKT++M A+ RN  ++  L G D +    K+LQ L  
Sbjct: 263 LKKGEDAGLALAKKVYAYIHKNGYKTKLMAAAIRNKQDVFSLLGIDYIIAPLKILQSLEE 322

Query: 390 S 388
           S
Sbjct: 323 S 323


>04_01_0112 +
           1151242-1151272,1151722-1151928,1151996-1152318,
           1152552-1153793
          Length = 600

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 137 IHFHVGIYLMYE-NLIFSSTTFIWIKFLGFYGFVILLIWDPCC 12
           +H + G++   + +L+F S  F     LGF+G V LLIWD  C
Sbjct: 538 LHQNQGVFDAIDTSLVFWSYVFGCFA-LGFWGTVALLIWDEVC 579


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 678 LFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKE 556
           ++ L  A A  EA +   S     ILDW V H+ K Y  +E
Sbjct: 727 IYDLENAKAAEEAKLLNKSHLHKLILDWNVNHSTKDYSQEE 767


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,691
Number of Sequences: 37544
Number of extensions: 332283
Number of successful extensions: 783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)