Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j18r
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)               235   3e-62
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)                    30   2.2  
SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)                  30   2.2  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_19016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)                      28   6.8  
SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)                 28   9.0  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score =  235 bits (575), Expect = 3e-62
 Identities = 115/183 (62%), Positives = 132/183 (72%), Gaps = 1/183 (0%)
 Frame = -1

Query: 735 IQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGK 559
           IQAA+ LE+ HGIHCNLTLLF+  QA+ACAEA VTLISPFVGRI DWYV  T +K YE  
Sbjct: 41  IQAARILERDHGIHCNLTLLFAFVQAVACAEAGVTLISPFVGRIYDWYVAKTGQKEYEPH 100

Query: 558 EDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXX 379
           EDPGV SVT IYNYYKKFGYKT VMGASFRN G+I  L GCD LTISP LL++L +S   
Sbjct: 101 EDPGVKSVTAIYNYYKKFGYKTVVMGASFRNVGQITGLTGCDKLTISPSLLEKLQNSNEA 160

Query: 378 XXXXXXXXXXXLNDIEKISLTESEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIKTL 199
                        DIEK+ + E  FRW LNED MAT+KL++GIR+FA D  KLE L+K  
Sbjct: 161 ITQKLSSEEAGKLDIEKVEVDEKSFRWLLNEDAMATEKLAEGIRKFAVDAVKLEGLLKEK 220

Query: 198 LAN 190
           + N
Sbjct: 221 MQN 223


>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
          Length = 521

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 731 KQPKSWRRSMESIVILHCCSLCTKLLPVL 645
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 199 KPIEEWRLSWEVIIIDECCKVQTKVLRVI 227


>SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)
          Length = 396

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 731 KQPKSWRRSMESIVILHCCSLCTKLLPVL 645
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 60  KPIEEWRLSWEVIIIDECCKVQTKVLRVI 88


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = +2

Query: 179 SDYLLARSVLMRDSSFLVSAANRLIPSESLSVAM*SSLRCQRNSDSVSDIFSMSFKAANF 358
           + Y LA S +    + +    NR+ P   L +    S     N  S S ++S S + A+ 
Sbjct: 193 ASYQLALSTMKNICTLMHDIRNRVAPKNILDLFSDISNVHSYNIRSSSSVYS-SIQLADA 251

Query: 359 GSRTFFSGLSLLANSCSNLGL 421
           G + FF+  SLL  S + L L
Sbjct: 252 GDKFFFNHTSLLQVSSATLPL 272


>SB_19016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 520 VVNFCHGNYSGVFLALISLLCMFNIPIQYTTNKW*Y*CNIC 642
           V+N+   N +   LA  S+   F+IP+Q    KW Y  N+C
Sbjct: 4   VMNYFLVNLAVCDLAFTSVCLPFDIPVQENGFKWPYHPNLC 44


>SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)
          Length = 467

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 606 ILDWYVEHTKKTYEGKEDPGVVSVTKIYN-YYKKFGYKTQVMGASFRNTGEIRELAG 439
           I+D ++  T  T +  EDP +V V+KI N +     +  Q  G  +RN G I  L G
Sbjct: 413 IID-HLNTTSSTQQENEDP-IVQVSKILNAHMNSLQWIDQNAGMLWRNGGPIGNLRG 467


>SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)
          Length = 248

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 417 D*LSANHSRLIHVFPRYYGKMHPLLGSCNQTSCN 518
           D L ANH +++  FP +  K+   + + NQ  CN
Sbjct: 58  DRLPANHQQMLPDFPNHLQKVSQCIDANNQFLCN 91


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 423  LSANHSRLIHVFPRYYGKMHPLLGSCNQTSCNSCKFLSRK---LLRGLPCPHKSSLYVQH 593
            +S + S ++H+   Y      LLGSCN    N+ + + +    LL G   P   +L++  
Sbjct: 4976 VSQSLSVVVHIPREYCLNASGLLGSCNDEIANNTRTIEQHVNGLLSGSSVPKSQTLFIYE 5035

Query: 594  TNPIYDQQMV 623
                ++ +++
Sbjct: 5036 YLGYFEHRVI 5045


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,318,515
Number of Sequences: 59808
Number of extensions: 405608
Number of successful extensions: 987
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)