Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j18r
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-1|AAK93861.1| 319|Caenorhabditis elegans Hypothetical ... 230 7e-61
AC006729-2|AAM15613.1| 165|Caenorhabditis elegans Hypothetical ... 202 2e-52
AC084159-6|AAK39360.1| 97|Caenorhabditis elegans Hypothetical ... 99 3e-21
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ... 29 3.4
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 28 6.0
U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside tri... 28 7.9
U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AC006729-1|AAK93861.1| 319|Caenorhabditis elegans Hypothetical
protein Y24D9A.8a protein.
Length = 319
Score = 230 bits (563), Expect = 7e-61
Identities = 110/178 (61%), Positives = 135/178 (75%), Gaps = 1/178 (0%)
Frame = -1
Query: 735 IQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGK 559
I+AAK LE KHGIHCN+TLLF+ QA+ACAE+ VTLISPFVGRI+DW+V++T +K Y K
Sbjct: 139 IRAAKFLESKHGIHCNMTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRK 198
Query: 558 EDPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXX 379
+DPGVVSVT+I+NYYKK+ YKTQVM ASFRNT EI+ L GCDLLTISP LL++LA+
Sbjct: 199 DDPGVVSVTRIFNYYKKYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETEL 258
Query: 378 XXXXXXXXXXXLNDIEKISLTESEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIK 205
D+ K+S+ E FRW LNED MAT+KL++GIR FA D R LE LI+
Sbjct: 259 APVVLSTSHAKTLDLPKVSIDEKAFRWALNEDAMATEKLAEGIRNFAKDARTLEKLIE 316
>AC006729-2|AAM15613.1| 165|Caenorhabditis elegans Hypothetical
protein Y24D9A.8b protein.
Length = 165
Score = 202 bits (493), Expect = 2e-52
Identities = 97/162 (59%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Frame = -1
Query: 687 LTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGKEDPGVVSVTKIYNYYK 511
+TLLF+ QA+ACAE+ VTLISPFVGRI+DW+V++T +K Y K+DPGVVSVT+I+NYYK
Sbjct: 1 MTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYK 60
Query: 510 KFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXLNDIE 331
K+ YKTQVM ASFRNT EI+ L GCDLLTISP LL++LA+ D+
Sbjct: 61 KYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETELAPVVLSTSHAKTLDLP 120
Query: 330 KISLTESEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIK 205
K+S+ E FRW LNED MAT+KL++GIR FA D R LE LI+
Sbjct: 121 KVSIDEKAFRWALNEDAMATEKLAEGIRNFAKDARTLEKLIE 162
>AC084159-6|AAK39360.1| 97|Caenorhabditis elegans Hypothetical
protein Y73B3A.2 protein.
Length = 97
Score = 99.1 bits (236), Expect = 3e-21
Identities = 49/94 (52%), Positives = 61/94 (64%)
Frame = -1
Query: 486 MGASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXLNDIEKISLTESE 307
M ASFRNT EI+ L GCDLLTISP LL++LA+ D+ K+S+ E
Sbjct: 1 MAASFRNTEEIKGLVGCDLLTISPALLKQLAAETEFAPVVLSTSHAKTLDLPKVSIDEKA 60
Query: 306 FRWHLNEDHMATDKLSDGIRRFAADTRKLESLIK 205
FRW LN+D MAT+KL++GIR FA D R LE LI+
Sbjct: 61 FRWALNDDAMATEKLAEGIRNFAKDARTLEKLIE 94
>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
protein C48E7.6 protein.
Length = 1764
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 342 NDIEKISLTESEFRWHLNEDHMATDKLSDGI 250
N+ ++S TE +HL H ATD LSD +
Sbjct: 1209 NERNRVSWTELRTSFHLLYKHTATDSLSDSL 1239
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 28.3 bits (60), Expect = 6.0
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = +2
Query: 398 NSCSNLGLIVSKSQPANSRISPVLRKDAPITWVL*PNFL**L*IFVTETTPGSSLPS*VF 577
++ S L IVS P S +SP++ +PI L P + L T TP + V
Sbjct: 2062 STVSTLSPIVSTLSPIVSTLSPIVSTLSPIVSTLSPT-VSTLSSNATSLTPSNP----VL 2116
Query: 578 FVCSTYQSNIRPTNGDISVTFA 643
+T QS T G S+TF+
Sbjct: 2117 VSTATTQSPATTTKGSSSITFS 2138
>U41007-12|AAA82272.1| 485|Caenorhabditis elegans Nucleoside
triphosphatase protein 1 protein.
Length = 485
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 284 SSLRCQRNSDSVSDI-----FSMSFKAANFGSRTFFSGLSLLANSCSNLGLIVSKSQPAN 448
SS R QR+ SV + + + A + G+R F L L+ +N+ ++ +S+P
Sbjct: 5 SSERVQRSVRSVVETKNNIKYGVICDAGSSGTRLFVYTLKPLSGGLTNIDTLIHESEPVV 64
Query: 449 SRISPVL 469
+++P L
Sbjct: 65 KKVTPGL 71
>U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical
protein B0244.10 protein.
Length = 628
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 421 DCQQITAG*FTYFPGITERCTHYLGLVTKLLVIVVNFCHG-NYSGVFLALISLLCMF 588
DC FP I +LG +T LL ++NF S VF + +S+ +F
Sbjct: 567 DCYDFYNANSLIFPAIVSSLETFLGSITFLLDPIINFSFDKRISKVFSSQVSMFSIF 623
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,031,704
Number of Sequences: 27780
Number of extensions: 322075
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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