Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j18f
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 130 1e-30
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040... 38 0.009
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 31 0.80
06_03_0743 + 24069752-24070483,24071890-24072345 29 3.2
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 29 4.3
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 28 5.6
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 28 7.5
12_01_0740 + 6646471-6649407 27 9.9
12_01_0722 + 6355972-6359031 27 9.9
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931 27 9.9
01_01_0205 + 1764034-1767601,1767934-1767944 27 9.9
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 130 bits (313), Expect = 1e-30
Identities = 66/193 (34%), Positives = 117/193 (60%), Gaps = 3/193 (1%)
Frame = +2
Query: 38 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYG 211
++ LD + S +V DT F+ +++ PT AT + SL+L AG+ +++ +D A+ G
Sbjct: 63 VTELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADG 122
Query: 212 KDNG-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINL 388
+ N E++++ L G E+ ++PGRVS E+DARL++D I + + + L
Sbjct: 123 ECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKL 182
Query: 389 FAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISP 568
+++H + ER+L K+ +TW+GI+A++ LE + GI +LT ++S QA A A+A +++
Sbjct: 183 YSDHDVLSERLLFKIPATWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGASVVQI 241
Query: 569 FVGRILDWYVEHT 607
FVGR+ DW H+
Sbjct: 242 FVGRVRDWARTHS 254
>01_07_0031 -
40603243-40603491,40603617-40603799,40603896-40604084,
40604244-40604916,40605583-40605737
Length = 482
Score = 37.5 bits (83), Expect = 0.009
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Frame = +2
Query: 176 YQHILDKAIKYGKDNGSSIEEQVAETLDMLSVLFG--CEILKIIPGRVSVEVDARLSFDK 349
Y + I GKD S+ E V + + LF + G VSVEV RL+ D
Sbjct: 171 YDDQFKQLILAGKDAESAYWELVIKDIQDACKLFEPIYDQTDGADGYVSVEVSPRLANDT 230
Query: 350 DASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSL--Y 523
++ +A K+++ + + + IK+ +T E + + KE+ +GI N+TL+FS+ Y
Sbjct: 231 QGTV-EAAKWLHKVVD----RPNVYIKIPATAECVPSIKEVIA-NGISVNVTLIFSIARY 284
Query: 524 QAI 532
+A+
Sbjct: 285 EAV 287
>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 31.1 bits (67), Expect = 0.80
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -3
Query: 390 NKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHP 277
N +++++AF +A S+ N+ STS G + +I+ P
Sbjct: 897 NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 382 QFIC*TWY*KRKNFN*IGLHLGRNSSSQRVGEEAWNPL*SYTVVLFVPSYCLC*SKCYTN 561
QF C Y +N + +H+ + S R G E+ T +L +P YC C + C N
Sbjct: 227 QFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGT-QPTAMLRLPCYC-CAAGCRNN 284
Query: 562 I 564
I
Sbjct: 285 I 285
>12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.7 bits (61), Expect = 4.3
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Frame = -3
Query: 636 GSSLPS*VFXVCSTYQSNIRPTNGDISVTF---ASAQAIAWYKENNSVRLQWIPCFFSNS 466
GSS PS + +T QS+ T+G + F +S+++ ++ + P FS
Sbjct: 730 GSSSPSSMIFAGATSQSSSITTSGSVPFQFSSQSSSESSLAGQDKSKAASSSAPFSFSPQ 789
Query: 465 LAA*IP--SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDNLAST---STDTRPG 301
+ P Q ++N + S L+ S ++ N + + S SN NL S+ + + P
Sbjct: 790 FGSTSPFAGQGKSNSVSSQSTLL--SGSQFSN--SLSAQTSTSNSNLLSSEKVNPGSSPS 845
Query: 300 IIFNISHPKST--LSISKVSATCSSMELPLSFP 208
F S P S+ S++ S T S+ S P
Sbjct: 846 FAFGSSAPGSSPVFSLAVGSGTTSATPASASSP 878
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +2
Query: 8 SGEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHI 187
S EP ++T + A DQ K T+V G A K T +L + M ++
Sbjct: 3142 SAEPTKRKTVVGASDQAKASETIVDREGMMTAPYREKSLCPDTQHAL-RNVLEMSPSDNL 3200
Query: 188 LDKAIKYGKDNGSSIEEQVAETLDMLS 268
D G+++GS E ++ D ++
Sbjct: 3201 TDNPFA-GQEHGSFSEGSTTDSRDAIT 3226
>06_03_0635 -
22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 509 LFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKE 631
++ L A A EA + S ILDW V H+ K Y +E
Sbjct: 727 IYDLENAKAAEEAKLLNKSHLHKLILDWNVNHSTKDYSQEE 767
>12_01_0740 + 6646471-6649407
Length = 978
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -2
Query: 271 HTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSSICRLIFFHGLKI 92
H Q Q + L + G I +S I L+L S+ E+ I SSI L HGL +
Sbjct: 786 HGQTYQFTAALTYKGNDITISK----ILRSLVLIDVSNNEFDGSIPSSIGELALLHGLNM 841
Query: 91 S 89
S
Sbjct: 842 S 842
>12_01_0722 + 6355972-6359031
Length = 1019
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -2
Query: 271 HTQHIQSFSHLFFNGASIILSIFNSFIKNVLILFHTSSREY*AWICSSICRLIFFHGLKI 92
H Q Q + L + G I +S I L+L S+ E+ I SSI L HGL +
Sbjct: 827 HGQTYQFTAALTYKGNDITISK----ILRSLVLIDVSNNEFDGSIPSSIGELALLHGLNM 882
Query: 91 S 89
S
Sbjct: 883 S 883
>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
Length = 461
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 414 SFLIPCSANKLINLIAFAMLASL 346
SF +PC NK+IN++ LA L
Sbjct: 409 SFPVPCKLNKIINMVHAPFLAIL 431
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 405 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIF 292
IP NKLINL++ + NDN + ++ IIF
Sbjct: 148 IPMGINKLINLVSLDLSKRYVNDNSDISFNESDDEIIF 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,451
Number of Sequences: 37544
Number of extensions: 353933
Number of successful extensions: 860
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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