Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j16r
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           26   4.1  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   7.2  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   9.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   9.5  

>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 401 QNNLTSCYSWWLINTHYTKNKVN 469
           +NN+     WWL + HY K+ VN
Sbjct: 147 ENNVKG--DWWLASGHYAKSVVN 167


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 237 LAKGLAPLRRLIFLIYFYSTLFSEVDSASLFCSLKKSAKN 356
           +A GL PLR LI L++    + +++ S    CS++ S  N
Sbjct: 161 VAAGL-PLRELISLVFGSPPILNKLFSVKNGCSIQSSGLN 199


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 490 YKILLLPVYFILSIMRIYKPPG 425
           YK L L  YFI++I  I  P G
Sbjct: 596 YKFLKLVQYFIINIFDILSPAG 617


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 151 QVAEEWANKIIEYEEQTEETK 89
           Q+  E  NKI EY +QTE+ K
Sbjct: 109 QINTELRNKIREYIDQTEQQK 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,759
Number of Sequences: 5004
Number of extensions: 36077
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)