Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j16f
(573 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 1.6
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 23 2.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.8
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 23 2.8
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 2.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.7
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 21 8.7
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 21 8.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.7
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 21 8.7
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.4 bits (48), Expect = 1.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 346 TTTTPEVIATAIRTLAKGLAPLRRLIFLIYFYSTLF 239
TT TP+ IA I ++ + P+ +IF I ++S ++
Sbjct: 433 TTMTPQEIAQWIDRRSRIVFPVAFIIFNILYWSFIW 468
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 22.6 bits (46), Expect = 2.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 274 LIFLIYFYSTLFSEV 230
LIF+I FYS L S +
Sbjct: 233 LIFIILFYSRLLSSI 247
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 2.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 383 LSFYVRSVKHSINNDDTRSNCY 318
L Y RS H N + RSN Y
Sbjct: 240 LQKYTRSFAHQSINKEARSNLY 261
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 22.6 bits (46), Expect = 2.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 274 LIFLIYFYSTLFSEV 230
LIF+I FYS L S +
Sbjct: 233 LIFIILFYSRLLSSI 247
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.6 bits (46), Expect = 2.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 383 LSFYVRSVKHSINNDDTRSNCY 318
L Y RS H N + RSN Y
Sbjct: 235 LQKYTRSFAHQSINKEARSNLY 256
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 7 SDEIKTLSKKLQYYVTKFCYYPFTLFLV 90
SDEI + K V + C FTLF V
Sbjct: 418 SDEIISDWKFAAMVVDRLCLIVFTLFTV 445
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 7 SDEIKTLSKKLQYYVTKFCYYPFTLFLV 90
SDEI + K V + C FTLF V
Sbjct: 418 SDEIISDWKFAAMVVDRLCLIVFTLFTV 445
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 7 SDEIKTLSKKLQYYVTKFCYYPFTLFLV 90
SDEI + K V + C FTLF V
Sbjct: 418 SDEIISDWKFAAMVVDRLCLIVFTLFTV 445
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 7 SDEIKTLSKKLQYYVTKFCYYPFTLFLV 90
SDEI + K V + C FTLF V
Sbjct: 418 SDEIISDWKFAAMVVDRLCLIVFTLFTV 445
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 7 SDEIKTLSKKLQYYVTKFCYYPFTLFLV 90
SDEI + K V + C FTLF V
Sbjct: 418 SDEIISDWKFAAMVVDRLCLIVFTLFTV 445
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 7 SDEIKTLSKKLQYYVTKFCYYPFTLFLV 90
SDEI + K V + C FTLF V
Sbjct: 418 SDEIISDWKFAAMVVDRLCLIVFTLFTV 445
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.0 bits (42), Expect = 8.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 568 VYLHIYFIYISRMTLPARQSNI 503
VYL IY R+ ARQS I
Sbjct: 215 VYLEIYLATRRRLRERARQSRI 236
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.0 bits (42), Expect = 8.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 568 VYLHIYFIYISRMTLPARQSNI 503
VYL IY R+ ARQS I
Sbjct: 215 VYLEIYLATRRRLRERARQSRI 236
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 7 SDEIKTLSKKLQYYVTKFCYYPFTLFLV 90
SDEI + K V + C FTLF V
Sbjct: 486 SDEIISDWKFAAMVVDRLCLIVFTLFTV 513
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 7 SDEIKTLSKKLQYYVTKFCYYPFTLFLV 90
SDEI + K V + C FTLF V
Sbjct: 486 SDEIISDWKFAAMVVDRLCLIVFTLFTV 513
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.0 bits (42), Expect = 8.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 568 VYLHIYFIYISRMTLPARQSNI 503
VYL IY R+ ARQS I
Sbjct: 215 VYLEIYLATRRRLRERARQSRI 236
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,442
Number of Sequences: 438
Number of extensions: 2779
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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