Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j11r
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13...    29   5.0  

>03_01_0016 +
           131141-131236,131743-132043,132125-132341,132440-132773,
           132883-132996,133065-133193,133293-133469,133555-133746,
           134844-134981,135327-135559,135900-136003,136633-136727,
           136817-137053,137801-137922,138252-138354,138750-138826,
           138909-139017,139107-139253,139953-140000,140292-140492,
           140589-140738,140917-141002,141088-141193,141278-141373,
           141759-141911,142647-142819,142923-142986,144056-144193,
           144548-144595,144690-144836,144907-144968,146540-146645,
           147357-147461,147548-147679,147765-147974,148070-148171,
           148261-148398
          Length = 1729

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 131 LVSCPLCHFINHIKFFVIMKT-LNVNLVSCLHVI 33
           L++CP+CH +  + FF I+K         C+ V+
Sbjct: 841 LINCPVCHLLCMLLFFHILKVPAQAKAKECIEVL 874


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,967
Number of Sequences: 37544
Number of extensions: 235542
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)