Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j11r
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_17078| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_33767| Best HMM Match : PRA-PH (HMM E-Value=0.42)                   24   8.8  
SB_37261| Best HMM Match : rve (HMM E-Value=2.1e-08)                   28   9.0  

>SB_49135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 51  NQINVQCFHDHEKFNMIDKMTQGTRHQMTIIRCNRFEATSVL*ILTVSTRDHTARYFRKL 230
           N I VQC   +E  +M  K+ +       +       ATS+  I T S   H  RYF +L
Sbjct: 339 NNIGVQCTWSYEASDMFYKIPKDLSIPDILKDRRVLHATSIHPIRTPSVMYHVHRYFTEL 398

Query: 231 Q 233
           +
Sbjct: 399 E 399


>SB_17078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 307 PMFCRRESALIVQLYIVVGKS 245
           PM CRR+ A +V+ YI++G S
Sbjct: 165 PMDCRRKMASVVRNYILIGSS 185


>SB_33767| Best HMM Match : PRA-PH (HMM E-Value=0.42)
          Length = 139

 Score = 24.2 bits (50), Expect(2) = 8.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 140 NCHLVSCPLCHFINHIKFFVIMKTLNVNLVSCLHVIKNY 24
           NC ++ CP+C           + TL V  V C  VI  Y
Sbjct: 32  NCPIIYCPVCAVSRRYCTVYRIVTLLVVAVLCRLVIVQY 70



 Score = 22.2 bits (45), Expect(2) = 8.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 287 KRVNCSVIHC 258
           KR+NC +I+C
Sbjct: 29  KRINCPIIYC 38


>SB_37261| Best HMM Match : rve (HMM E-Value=2.1e-08)
          Length = 757

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 307 PMFCRRESALIVQLYIVVGKSLE 239
           P FC  +SA+ +QLYI V K ++
Sbjct: 649 PAFCEIKSAVKIQLYIQVSKEID 671


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,058
Number of Sequences: 59808
Number of extensions: 321978
Number of successful extensions: 501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)