Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j11f
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    30   0.34 
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    27   2.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   5.6  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    26   5.6  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    26   5.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.4  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   7.4  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   7.4  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.4  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   7.4  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   9.8  

>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +3

Query: 15  ITYCDHKFIENFIKNIWQTA*IFNKTSIYIFGDGSCGRKVNQQREIQWRKCIAIFTVFTN 194
           I  CD       + ++ QT   F  TS Y+  +   G K   + +I W   I+I  + T 
Sbjct: 200 IKLCDFGVSGELVNSVAQT---FVGTSTYMSPERIRGGKYTVKSDI-WSLGISIIELATQ 255

Query: 195 ---WSYSDGDQNIPGCDIMDCI 251
              WS+S+ D +I   D++ CI
Sbjct: 256 ELPWSFSNIDDSIGILDLLHCI 277


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 429 TYGTKDMCSCKRIETCHIVSNQHTTSWVSLSFELHIDTKSP 307
           TYG   MC  K +E  H VS++     V ++   + D ++P
Sbjct: 421 TYGLAAMCFTKDLERAHRVSDELEAGMVFINSTENSDIQAP 461


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 245 IHNITPRNILITIRITP-IGKYSKNCNAFSPL 153
           IHN+TP N++I   + P +  + K+ +++ P+
Sbjct: 743 IHNVTPNNLVIFKNLFPEVLSFVKSNHSYDPI 774


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 399 CSCTCLWYHKFEKMEVATIFRIDVGYKERLTIF 497
           C   CL Y    K EV T   IDV +KE   +F
Sbjct: 44  CKNVCL-YMNMPKKEVRTRCLIDVAFKEGKNVF 75


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 169 LQFLLYLPIGVILMVIRIF-LGVILWIASIILPNKWAVSHMLTTLACWTFGV 321
           + FL  LP  V + +  +  + +++WI + I+ +    S  L+ L  WT G+
Sbjct: 23  IPFLSKLPPKVSVPIFSLISVNIVVWIVAAIVISLVNRSLFLSVLLSWTLGL 74


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 257 IIDAIHNITPRNILITIRITPIG--KYSKNCNAFSPLNLSLLINFS 126
           I D +  +   NI  T  +   G  K +K+ + F+PLNL   +N+S
Sbjct: 578 ITDCLSFLLEHNIFNTFLVYNEGIVKLNKDFDDFTPLNLLKCVNYS 623


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 478 LYPTSMRKMVATSIFSNLWYQRHVQLQEN 392
           LYP S RKM    IF+  W   ++   EN
Sbjct: 165 LYPESKRKMGLPVIFTRNWSDENLLPNEN 193


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 437 DGSCHHFSHRRWV*RTPHNFLK 502
           +GS +H+SHR W+ RT    LK
Sbjct: 553 NGSSNHYSHRVWL-RTKAEILK 573


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 442  KLPPFFASTLGIKNASQFSKKQHFSEV 522
            K PPFF+S++ +K     SK   FSE+
Sbjct: 1186 KTPPFFSSSVPLKALICVSKLNLFSEL 1212


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 38  HREFYKKYMADSVNIQQNIYLHIR*WLLRQKS*STKRDSMEKM 166
           HR      M   +NI ++ YLH R W   +   STK D   K+
Sbjct: 753 HRILMFFQMTQIMNIMED-YLHYRQWRYLRLDGSTKADDRSKL 794


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 282 SHVNYFGLLDFWCLCEAQRTKRP 350
           SH  Y  L D + LC   R KRP
Sbjct: 12  SHRRYNPLTDSYVLCSPHRAKRP 34


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 44  EFYKKYMADSVNIQQN--IYLHI 106
           +FY KY+ +++NI  N  I+LH+
Sbjct: 217 DFYNKYVLENLNIINNLQIFLHL 239


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 251 DAIHNITPRNILITIRITPIGKYSKNCNAFSPLNLSLLINF 129
           D    +  RN+ +  R    GK+  N +A + +NL L  NF
Sbjct: 44  DVAIQLPDRNVTLWSRQAVFGKHFTNASATTVINLYLPSNF 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,599
Number of Sequences: 5004
Number of extensions: 71006
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)