Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j11f
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59542| Best HMM Match : Pyrophosphatase (HMM E-Value=1.9)           29   4.5  
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    29   4.5  
SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)                28   5.9  
SB_57510| Best HMM Match : Keratin_B2 (HMM E-Value=5.4)                28   7.9  
SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)                 28   7.9  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               28   7.9  

>SB_59542| Best HMM Match : Pyrophosphatase (HMM E-Value=1.9)
          Length = 149

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 129 KVNQQREIQWRKCIAIFTVFTNWSYSDGD 215
           KV+  RE+   K  AIF +FT++ Y D D
Sbjct: 28  KVHDMREVCENKYDAIFNLFTSFGYFDDD 56


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 381 DMFRFSCSCTCLWYHKFEKMEVATIFRIDV 470
           D+F  +CSC C+ +H F  M   +  ++DV
Sbjct: 124 DVFHIACSCRCVPHHVFMSMCPPSRAQVDV 153


>SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 199 VILMVIRIFLGVILWIASIILPNKWAVSHML 291
           V+L ++ + +  I+W+ S +L  KW+ +  L
Sbjct: 93  VVLCLLAVLISSIVWVVSALLDKKWSTNPSL 123


>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
          Length = 533

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 381 DMFRFSCSCTCLWYHKFEKMEVATIFRIDV 470
           D+F  +CSC C+ YH    M  ++   +DV
Sbjct: 278 DVFPIACSCRCVSYHVLMSMCSSSRAHVDV 307


>SB_57510| Best HMM Match : Keratin_B2 (HMM E-Value=5.4)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 381 DMFRFSCSCTCLWYHKFEKMEVATIFRIDV 470
           D+F  +CSC C+++H    M  ++   +DV
Sbjct: 164 DVFPIACSCRCVFHHVLMSMCSSSRAHVDV 193


>SB_43634| Best HMM Match : Sushi (HMM E-Value=1.2e-16)
          Length = 986

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -1

Query: 662 ARVKARSTVMATGCTLLLIWNGQSVKRNTALPFVGPLSGCINTGFVGTSEKCCFLENCEA 483
           +R K+RS V+    T L+I +G   + +T +PF   L  C N G     ++ C  +    
Sbjct: 518 SRRKSRSRVIIH--TALVISSGAQCRNSTKIPFNSSLMFCANDG--KDYKQTCRGDGGSP 573

Query: 482 FFIPNVDAKNGG 447
           F   + D K+ G
Sbjct: 574 FISESYDRKSRG 585


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 276 SQSHVNYFGLLDFWCLCEAQRTKRPKM*CVGC*LCDMFRFSCSCTCLWYHKFEKM 440
           S+SHV+ F +  F C C +       M        D+F  +CSC C  YH    M
Sbjct: 464 SRSHVDVFPIA-FSCRCVSHHVLM-SMCFPSRAHVDVFLIACSCRCFPYHVLMSM 516


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,741,214
Number of Sequences: 59808
Number of extensions: 520459
Number of successful extensions: 1238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)