Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j10r
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                        121   3e-28
03_04_0162 + 17858802-17861168                                         30   1.4  
11_01_0359 - 2731522-2732346                                           29   2.4  
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    27   7.5  
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549...    27   9.9  
02_02_0406 - 9888167-9888570,9890168-9890248,9892207-9892600           27   9.9  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score =  121 bits (292), Expect = 3e-28
 Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
 Frame = -3

Query: 465 LFAIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTT 286
           L  +PF+ L  P  +++ P+ L  PS MT F+L+LL+YF V  G++YDVIVEPP +GS  
Sbjct: 32  LRVLPFSFLRPPRTRLRLPSNLALPSPMTVFALILLTYFAVVSGLVYDVIVEPPGIGSVQ 91

Query: 285 D-EHGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXFIILDRTHNPTTPKLNRILLIS 109
           D   G  RPV F+P RVNGQYI+EGL+            I+LD   +   P+  R+    
Sbjct: 92  DPATGAVRPVVFLPGRVNGQYIIEGLSSGIMFVIGGIGIILLDLAVDRNRPRSLRVSFGG 151

Query: 108 VAFLCILVSFFTTWIFMRMKLPGYL 34
                I++++    +F+R+K+PGYL
Sbjct: 152 SGVAAIVIAYAMAMLFLRIKIPGYL 176


>03_04_0162 + 17858802-17861168
          Length = 788

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 327 YDVIVEPPSVGSTTDEHGHSR-PVAFMP 247
           Y V+V+PP  G+ TD+ GH R   +F+P
Sbjct: 56  YIVLVDPPPHGAATDDDGHRRWHESFLP 83


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 153 HNPTTPKLNRIL-LISVAFLCILVSFFTTWIFMRMKLPGY 37
           H P    L R+L L+  AFL +  + F  W+ +R ++P +
Sbjct: 79  HPPPPTCLRRLLGLVVAAFLLLGAATFIVWLLLRPRVPAF 118


>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 410 GFLIFMFGISKTVNGIANSPSISLLLVQ 493
           GFL    G+ + +  +AN PS+ L  VQ
Sbjct: 23  GFLCVKDGVDEMIKYVANEPSVGLYFVQ 50


>07_03_0635 +
           20151861-20152249,20152589-20152709,20154914-20154996,
           20155819-20155903,20155987-20156277,20156555-20156645,
           20157380-20158280,20158401-20158561,20158759-20158862,
           20159040-20159205,20159283-20159378,20159694-20159800,
           20160443-20160775,20161393-20161599,20161774-20161857,
           20162887-20163020,20163166-20163393,20163541-20163712,
           20164301-20164555,20164647-20164919
          Length = 1426

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 135 KLNRILLISVAFLCILVSFFTTWIFMRMKLP 43
           K N  L I  AF   ++ F T  +F+R K+P
Sbjct: 536 KRNSFLFIFKAFQLFVLGFITMTLFLRTKMP 566


>02_02_0406 - 9888167-9888570,9890168-9890248,9892207-9892600
          Length = 292

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 377 PFHWCYSLTFWLLEVLF 327
           P  WCY +T W L +L+
Sbjct: 185 PLFWCYEITAWGLVILY 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,821
Number of Sequences: 37544
Number of extensions: 318536
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)