Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j10r
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 32   0.27 
SB_42984| Best HMM Match : DUF1651 (HMM E-Value=7.2)                   29   1.9  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_28302| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 33/70 (47%), Positives = 41/70 (58%)
 Frame = +2

Query: 32  CKYPGNFIRMNIQVVKNDTKIHRNATEIRRIRFSFGVVGLCVRSSIMKPSPPSEKRKLDA 211
           C Y G+FI M  + VKNDT  H    +  R R S  +      S +M P+PP E +KL+A
Sbjct: 20  CTY-GSFILMKTRQVKNDTSTHTKPIKSSRNRLSLDMPTELDLSRMMNPTPPIENKKLEA 78

Query: 212 RPSMMY*PLT 241
           RPSMMY PLT
Sbjct: 79  RPSMMYCPLT 88


>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 666

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 166 TRPHTQPDHTKTESNSPYLCGVPMYFSVILYHLDIHAYEVARIFTEL 26
           T P T+ D  ++  ++P  CG+ +    +L+ + IH Y +  +FT L
Sbjct: 370 TDPGTRNDTEESPKSTPRKCGLALLSVTLLFTVFIHFYALQTLFTRL 416


>SB_42984| Best HMM Match : DUF1651 (HMM E-Value=7.2)
          Length = 173

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 268 QTCSLHAESC*WSVHHGRSCVELSLLTRRAWL 173
           Q+   H   C W + +G S  EL+ ++RR W+
Sbjct: 142 QSAKTHGCQCKWRLANGSSMTELNNVSRRIWI 173


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 169 NTRPHTQPDHTKTESNS 119
           N RPHT  DH+K ES +
Sbjct: 199 NPRPHTNADHSKPESGT 215


>SB_28302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 273 VHVHRSLNPRSVARLSHHK*YLQ*PKSKRVTPVKRLSWQTEL 398
           +HV  S   R   RL  HK  LQ   + ++ P+K   W+TE+
Sbjct: 16  MHVFHSDILRKRVRLISHK--LQGLPANKIFPIKNYEWETEM 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,843,443
Number of Sequences: 59808
Number of extensions: 382253
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)