Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j10f
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                        121   4e-28
03_04_0162 + 17858802-17861168                                         30   1.6  
11_01_0359 - 2731522-2732346                                           29   2.8  
06_01_1093 - 8970996-8971667,8971756-8971902,8971982-8972118,897...    29   3.8  
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    27   8.7  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score =  121 bits (292), Expect = 4e-28
 Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
 Frame = +3

Query: 84  LFAIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTT 263
           L  +PF+ L  P  +++ P+ L  PS MT F+L+LL+YF V  G++YDVIVEPP +GS  
Sbjct: 32  LRVLPFSFLRPPRTRLRLPSNLALPSPMTVFALILLTYFAVVSGLVYDVIVEPPGIGSVQ 91

Query: 264 D-EHGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPTTPKLNRILLIS 440
           D   G  RPV F+P RVNGQYI+EGL+            I+LD   +   P+  R+    
Sbjct: 92  DPATGAVRPVVFLPGRVNGQYIIEGLSSGIMFVIGGIGIILLDLAVDRNRPRSLRVSFGG 151

Query: 441 VAFLCILVSFFTTWIFMRMKLPGYL 515
                I++++    +F+R+K+PGYL
Sbjct: 152 SGVAAIVIAYAMAMLFLRIKIPGYL 176


>03_04_0162 + 17858802-17861168
          Length = 788

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 222 YDVIVEPPSVGSTTDEHGHSR-PVAFMP 302
           Y V+V+PP  G+ TD+ GH R   +F+P
Sbjct: 56  YIVLVDPPPHGAATDDDGHRRWHESFLP 83


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 396 HNPTTPKLNRIL-LISVAFLCILVSFFTTWIFMRMKLPGY 512
           H P    L R+L L+  AFL +  + F  W+ +R ++P +
Sbjct: 79  HPPPPTCLRRLLGLVVAAFLLLGAATFIVWLLLRPRVPAF 118


>06_01_1093 -
           8970996-8971667,8971756-8971902,8971982-8972118,
           8972343-8972612,8972731-8972868,8974965-8975394
          Length = 597

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 414 KLNRILLISVAFLCILVSFFTTWIFMRMKLPGYLQN*--FVS*FCTVLFLGCSTNKF 578
           KL  ++LI   F+   V+FFTT   +  K+  Y      F+  FC V+  G +T KF
Sbjct: 176 KLEEVILIISIFI---VAFFTTLTKLHPKMKAYEYGFRVFLLTFCYVMVSGYNTGKF 229


>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 139 GFLIFMFGISKTVNGIANSPSISLLLVQ 56
           GFL    G+ + +  +AN PS+ L  VQ
Sbjct: 23  GFLCVKDGVDEMIKYVANEPSVGLYFVQ 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,516,803
Number of Sequences: 37544
Number of extensions: 347222
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)