Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j08r
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 30 0.31
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.73
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 28 1.7
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 2.2
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.9
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 27 3.9
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 3.9
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 3.9
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 26 5.1
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 5.1
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 6.8
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 6.8
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 25 9.0
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 30.3 bits (65), Expect = 0.31
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = -1
Query: 578 MLVYNTLLKPKSAGRLLLKTK--NPF-DKPLLYADYYKDIED-LYTVIRAFKQH 429
++VY +++P+S R +L++ PF + +Y DYY DI+D ++ V F H
Sbjct: 408 IVVYQEIIQPESDIRYILESAATGPFLPRVEIYEDYYNDIKDQIFGVDVEFLSH 461
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.73
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +1
Query: 214 TLNFVSTTEVGS--PSAPIF---TVLVGWYNENVISLAIHSRNSSLFLSKLLQASNSIHS 378
T +FV TT S P F T G++N +V S+A+H+ + S + + S +
Sbjct: 154 TTSFVPTTTESSIHPITTGFYNTTFTTGYFNTSVTSVAVHNSTTVFPTSVPIVNTTSFNV 213
Query: 379 SLNPDSLKALVSPNLKLCCLKALITVY 459
+ P S SP+ L + LI+ +
Sbjct: 214 TTIPSSAVHYASPSGLLALVVMLISAF 240
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 211 RTLNFVSTTEVGSPSAPIFTVLVGW 285
+ L+ +S VGSPSAPI L W
Sbjct: 523 KNLSLMSYVSVGSPSAPIIEFLEEW 547
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 415 ARPKPSRNLDLSWNGLSWMPAKALIRTATNS*NVLLGKLHSHCTTQRV 272
+ P S N+D S N LS +K + + N+ LG LH + T R+
Sbjct: 44 SEPHESANVDESVNKLSKTFSKLSLNPTFQALNMDLGLLHENITLDRI 91
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 479 YKDIEDLYTVIRAFKQHSL 423
YKD DLY+ I FKQ SL
Sbjct: 389 YKDWHDLYSYIERFKQLSL 407
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 509 MDSWSSITIYPQIWVSTKYCKRAW 580
+DSWSSIT Y V + +AW
Sbjct: 77 VDSWSSITKYDNYTVENESYAKAW 100
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 274 LVGWYNENVISLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALV 411
++G Y+ + L H R+ + FL+ L QAS H + PD+L+ LV
Sbjct: 356 VLGLYSFLMKYLTPHQRDVTQFLACLAQAS---HEFVPPDALEPLV 398
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 647 FRKHGLSEEVHDKFRKMNENKYTMLVYN 564
F K+GL+EE+ FRK E+ +T+ N
Sbjct: 22 FWKNGLAEELELLFRKQCEDTFTLQAIN 49
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 354 AGI-QLNPFQLKSRFLEGFGLAQSQTMLFES 443
AG+ QLN F L F+EG+ +Q+ ++F++
Sbjct: 10 AGLKQLNDFLLDKSFIEGYEPSQADAVVFKA 40
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 485 DYYKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDK 339
D D D+Y +RAFK+ +L G ++ KL LD+ +F +
Sbjct: 95 DLISDQVDIYEKLRAFKKGTLESGSVVLIQKQHSKLRQ-RLDSILNFSR 142
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 269 VKMGADGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIM 129
V GADGD +DT L VT ++ S + T AP+ +
Sbjct: 1575 VYYGADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTL 1621
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 566 NTLLKPKSAGRLLLKTKNPFDKPLLYADYYKD 471
N K +AG +L++ + D P+L+ +YKD
Sbjct: 670 NLAKKKSTAGFVLVQLRKLADHPMLFRIHYKD 701
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 734 NTTDPNSPASDMQYHYLIFPPSSYNLLDMFRKHGLS-EEVHDKFRK 600
N N ASD YL P SYN L ++ LS E+V + +K
Sbjct: 105 NVLQLNINASDNSLAYLSKPEESYNFLTIYFSTLLSYEKVENLIKK 150
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 398 KESGFKLEWIELDACKSFDKNSDEFLECI 312
+++G K W E++ K+ + DE LECI
Sbjct: 67 EQNGGKFGWFEVEDFKNTYGSWDESLECI 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,425
Number of Sequences: 5004
Number of extensions: 76359
Number of successful extensions: 254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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