Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j08r
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 40 0.003
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 38 0.007
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.027
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 36 0.027
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 34 0.11
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 32 0.44
02_01_0315 - 2111095-2111241,2111496-2111579,2111803-2111883,211... 31 1.0
10_08_0397 + 17571492-17571664,17571875-17572034,17572140-175722... 30 1.8
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 30 1.8
04_03_0515 + 16698589-16701066 30 2.3
09_02_0027 + 3105963-3106276,3106298-3107027,3107069-3107134,310... 29 3.1
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 29 3.1
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 29 3.1
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 29 4.1
01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518 29 4.1
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 29 5.4
02_02_0061 + 6468190-6471046,6471318-6471736 29 5.4
07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815... 28 7.1
01_07_0352 - 42958903-42959010,42959928-42960142,42960651-429607... 28 7.1
11_03_0098 - 9981374-9981414,9982091-9982305,9982334-9982635 28 9.4
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 28 9.4
06_02_0305 + 14111798-14111843,14112645-14113111,14113299-14113667 28 9.4
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 28 9.4
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 28 9.4
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 28 9.4
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 39.5 bits (88), Expect = 0.003
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Frame = -1
Query: 572 VYNTLLKPKSAGRLLLKTKNPFDKPLLYADYYKDIEDLYTVIRAFKQHSLRLGETKAFKE 393
+ +L P S+G + L+T +P P + +Y+++ EDL + + R+ +++AF
Sbjct: 421 ILEKILGPVSSGHVELRTTDPRANPSVTFNYFREAEDLERCVHGIETIE-RVIQSRAFSN 479
Query: 392 ---SGFKLEWIELDACK------SFDKNSDEFLECIAREITFSLYHPTSTVKMGADGDPT 240
+ +E I D+ N E + +++H +GA
Sbjct: 480 FTYANASVESIFTDSANFPVNLLPRHVNDSRSPEQYCMDTVMTIWHYHGGCHVGA----- 534
Query: 239 SVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGE-KGADMIKKHW 90
VVD RV V GLRV+D+S N A +M+G G + + W
Sbjct: 535 -VVDDDYRVFGVQGLRVIDSSTFKYSPGTNPQATVMMLGRYMGVKIQSERW 584
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 38.3 bits (85), Expect = 0.007
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Frame = -1
Query: 572 VYNTLLKPKSAGRLLLKTKNPFDKPLLYADYYKDIEDLYTVIRAFK--QHSLRLGETKAF 399
+ +L P S G L L+ +NP D P + +Y+ EDL + + +R F
Sbjct: 418 ILEKILGPLSTGHLELRNRNPDDNPSVTFNYFAHPEDLRRCVAGVSVIERVIRSEAFANF 477
Query: 398 KESGFKLEWIELDACKSF-------DKNSDEFLECIAREITFSLYHPTSTVKMGADGDPT 240
F +E + L+ F N LE ++ +++H ++
Sbjct: 478 TYPYFSVETL-LNMTAGFPVNLRPRHDNDSTSLEQFCKDTVMTIWHYHGGCQV------N 530
Query: 239 SVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIG 123
VVD + RV V LRV+D S + N A +M+G
Sbjct: 531 RVVDAEYRVIGVDALRVIDGSTFNASPGTNPQATVMMLG 569
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 36.3 bits (80), Expect = 0.027
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 13/174 (7%)
Frame = -1
Query: 572 VYNTLLKPKSAGRLLLKTKNPFDKPLLYADYYKDIEDLYTVIRAFKQHSLRLGETKAFKE 393
+ +L P S G + L++ +P P + +Y++D D+ +R + R+ ++AF
Sbjct: 417 ILEKILGPMSTGHVALRSADPDANPAVTFNYFRDPRDVERCVRGIETIE-RVVRSRAFAR 475
Query: 392 SGFK----LEWIELDA------CKSFDKNSDEF--LECIAREITFSLYHPTSTVKMGADG 249
+ +E L + + + L+ RE +++H +GA
Sbjct: 476 FTYANVTAMEAAVLGRRAGHLPVNLLPRRATDTRPLQQYCRETVMTIWHYHGGCHVGA-- 533
Query: 248 DPTSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGE-KGADMIKKHW 90
VVD RV V GLRV+D+S N A +M+G G + K+ W
Sbjct: 534 ----VVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMMLGRYMGLKIQKERW 583
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 36.3 bits (80), Expect = 0.027
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Frame = -1
Query: 572 VYNTLLKPKSAGRLLLKTKNPFDKPLLYADYYKDIEDLYTVIR--AFKQHSLRLGETKAF 399
+ +L P+S GRL L+ +P D P + +Y+ +DL A + +R F
Sbjct: 410 ILEKVLGPQSTGRLALRNLDPDDNPTVSFNYFSHPDDLRRCAAGIATIERVIRSRAFSRF 469
Query: 398 KESGFKLEWIELDACKSFDKN-------SD-EFLECIAREITFSLYHPTSTVKMGADGDP 243
F ++ F N SD LE R+ +++H ++G
Sbjct: 470 AYPNFAFP-ATINVTAEFPANLMRMRGGSDPRALEQFCRDTVMTIWHYHGGCQVG----- 523
Query: 242 TSVVDTKLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIG 123
VVD RV + LRV+D S + N A +M+G
Sbjct: 524 -RVVDRDYRVLGIEALRVIDGSTFNASPGTNPQATVMMLG 562
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 34.3 bits (75), Expect = 0.11
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 11/196 (5%)
Frame = -1
Query: 677 PPSSYNLLDMFRKHGLSEEVHDKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTKNPFDKP 498
PP NL D +K+ VH K+ E + + + P S G L+L + P
Sbjct: 399 PPKQRNL-DAVKKY-----VHKKYNLPKEVFSGGFILSKIDGPLSTGNLVLVDTDINSNP 452
Query: 497 LLYADYYKDIEDLYTVIRAFKQHSLRLGETKAFKE-----SGFKLEWI-ELDACKSFD-- 342
+ +Y++ +DL + K R+ +T F G+ +E + + + +
Sbjct: 453 TVTFNYFQHPKDLSRCVYGIKTIE-RILKTNHFTNFTLNGGGYPMEVVLNMSVTANINLI 511
Query: 341 ---KNSDEFLECIAREITFSLYHPTSTVKMGADGDPTSVVDTKLRVRNVTGLRVMDASIM 171
N +E R+ +++H +G VVD + RV V+GLRV+D S +
Sbjct: 512 PKHTNDSTSMEQFCRDTVVTIWHYHGGCHVG------KVVDQQYRVIGVSGLRVIDGSTL 565
Query: 170 PSVIRGNTNAPSIMIG 123
N A +M+G
Sbjct: 566 FRSPGTNPQATVMMMG 581
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 32.3 bits (70), Expect = 0.44
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 11/161 (6%)
Frame = -1
Query: 551 PKSAGRLLLKTKNPFDKPLLYADYYKDIEDLYTVIRAFKQHSLRLGETKAFKE-----SG 387
P S G L L + P + +Y+ +DL + K R+ +T F E G
Sbjct: 421 PLSTGHLALIDTDVKKNPAVTFNYFSHPQDLTRCVYGIKTIE-RILKTNRFSELSANTDG 479
Query: 386 FKLEWI---ELDACKSF---DKNSDEFLECIAREITFSLYHPTSTVKMGADGDPTSVVDT 225
+E + + A + N E LE R+ +++H +G VVD
Sbjct: 480 HSMERVLNMSVQANVNLIPKHTNDTESLEQFCRDTVITIWHYHGGCHVG------KVVDQ 533
Query: 224 KLRVRNVTGLRVMDASIMPSVIRGNTNAPSIMIGEKGADMI 102
+ RV V+G+RV+D S N A +M+G MI
Sbjct: 534 QHRVLGVSGVRVVDGSTFSRSPGTNPQATVMMMGRYFGVMI 574
>02_01_0315 -
2111095-2111241,2111496-2111579,2111803-2111883,
2112133-2112310,2112447-2112623,2112688-2112734,
2112845-2112901,2113339-2113437,2113696-2113818,
2113895-2114017,2114241-2114264,2115096-2115209,
2115315-2115503,2115691-2115857,2116846-2116930,
2117698-2117778,2118239-2118424,2119266-2119314,
2119777-2119810,2120087-2120153,2120198-2120419
Length = 777
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 575 AWCIC--SRSFYGTYRGLLRLNRAYGTCPTSCRSLEGILSSGTAC 703
+W +C SR+++G +GL+ R Y CP ++ +LS C
Sbjct: 618 SWAVCFTSRTWFGA-KGLIAAGRTYENCPAIRKACNFLLSKELPC 661
>10_08_0397 +
17571492-17571664,17571875-17572034,17572140-17572222,
17572333-17572468,17572515-17572610,17573105-17573218,
17573322-17573405,17573493-17573648,17573744-17573818,
17574318-17574424,17574508-17574688,17574832-17575020,
17575397-17575477,17575621-17575755,17576007-17576329,
17576503-17576608,17576734-17576883,17577034-17577180
Length = 831
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +1
Query: 94 CFLIMSAPFSPIMIEGALVLPLITEGIILASITLRP---VTFRTLNFVSTTEVGSPSAP 261
CF ++SAP + + A PLI+ G + + ++ RTL+ S+ EVGS + P
Sbjct: 558 CFQLVSAPIDELFPDDA---PLISSGFRVIPLDMKTDGTPAGRTLDLASSLEVGSTAQP 613
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 491 YADYYKDIEDLYTVIRAFKQH 429
Y +YYK+++DL VI FK+H
Sbjct: 135 YGNYYKEVDDLRDVILHFKKH 155
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Frame = -1
Query: 668 SYN-LLDMFRKHGLSEEVHDKFRKMNENKY--TMLVYNTLLKPKSAGRLLLKTKNPFDKP 498
SYN L+D F K G ++ HD F KM E ++ Y++L+ + + K + +
Sbjct: 226 SYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL-RQ 284
Query: 497 LLYADYYKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSF 345
++ A + +I + + + FKE L ++ C SF
Sbjct: 285 MVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSF 335
>09_02_0027 +
3105963-3106276,3106298-3107027,3107069-3107134,
3107192-3107324,3108985-3109088
Length = 448
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 99 LDHVSSFLTDHDRRSVSITSDYGRHYTCVHYSEAGNVSN 215
LD + L DHD+RS H TC Y G+ N
Sbjct: 273 LDLLRKQLDDHDKRSQGTVKALDLHVTCEVYGSTGHSGN 311
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 29.5 bits (63), Expect = 3.1
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Frame = -1
Query: 479 YKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEFLE-CIARE 303
YK + + TV+ K + ETK F F L I +N + L C+ E
Sbjct: 455 YKGVLEDKTVVAIKKSKMMEEAETKEFAREMFILSQIN-------HRNVVKLLGCCLEVE 507
Query: 302 ITFSLYHPTSTVKM-----GADGDPTSVVDTKLRV--RNVTGLRVMDASIMPSVIRGNTN 144
+ +Y S + G + +DT+LR+ + L M +S P ++ G+
Sbjct: 508 VPMLVYEFVSNGTLYHYIHGKEPKADIPLDTRLRIAAESAEALSYMHSSASPPILHGDVK 567
Query: 143 APSIMIGEK 117
+I++ +K
Sbjct: 568 TANILLDDK 576
>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 346 KLLQASNSIHSSLNPDSLKALVSPNLKLCCLKA-LITVYKSSISL 477
K++Q +S+HS P ++ AL+ N K CL+ L +YK + L
Sbjct: 1106 KVIQERDSMHSGERPVNISALMQVNKKYRCLEIDLDGIYKRMLLL 1150
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 761 SPHRVIAFENTTDPNSPASDMQYHYLIFPPSSY-NLLDMFRKHGLSEEVHDKFRKM 597
S + I+ T+ N P S + YL PPS Y ++ M R + ++ H + ++
Sbjct: 122 SLNNAISENETSKNNKPGSSRRLFYLALPPSVYPSVCKMIRSYCMNPSSHSGWTRV 177
>01_05_0177 - 18968803-18968855,18969053-18969109,18969975-18970518
Length = 217
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/125 (23%), Positives = 51/125 (40%)
Frame = -1
Query: 557 LKPKSAGRLLLKTKNPFDKPLLYADYYKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKL 378
++ KS R +KT + L ADY+ + + LY + + R+G +
Sbjct: 45 IRRKSVTRKTIKTDHTVAHHCLIADYFSE-DPLYP--ESMFRTRFRMGRPLFLRIVSALG 101
Query: 377 EWIELDACKSFDKNSDEFLECIAREITFSLYHPTSTVKMGADGDPTSVVDTKLRVRNVTG 198
W K ++C R+ L T+T++M A G P +D L++ T
Sbjct: 102 RWSPYFTLK---------VDCSGRQGLSPLQKCTTTMRMLAYGSPADSLDEYLKIGKSTS 152
Query: 197 LRVMD 183
L+ +D
Sbjct: 153 LQCLD 157
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 94 CFLIMSAPFSPIMIEGALVLPLITEGIILASITLRPVTFRTLNFVSTTEVGS 249
C ++ AP + A +LP I L T P RTL+ ST EVGS
Sbjct: 585 CAQLVFAPIDESFADDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGS 636
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 671 SSYNLLDMFRKHGLSEEVHDKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTKN 513
++YN + GL V KF +MN N Y + ++L K K+ RL L N
Sbjct: 440 TNYNSMTGKIPEGLGNLVSLKFIEMNNNFYEGTIPDSLGKLKNLNRLYLTNNN 492
>07_02_0019 +
11877119-11879984,11880316-11880389,11881293-11881511,
11881557-11881679,11881759-11881859,11881938-11881990,
11882084-11882269,11882677-11882894
Length = 1279
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 518 WSSITIYPQIWVSTKYCKRAWCICSRSFYGTYRGLL-RLNRAYGTCPTSCRSLEGILS 688
WSS + P + A +C+ S + GLL ++ RAY + P S+ LS
Sbjct: 110 WSSPQLAPSAPAPDAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALS 167
>01_07_0352 -
42958903-42959010,42959928-42960142,42960651-42960773,
42960884-42960973,42961057-42961164,42961623-42961808,
42961858-42961923,42962312-42962495
Length = 359
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 304 SLAIHSRNSSLFLSKLLQASNSIHSSLNPDSLKALVSPNLKLCCL 438
+L+ H R+ +L S +Q SN L S+ ++ N +L CL
Sbjct: 81 ALSSHGRSETLQTSSAVQGSNKTKYDLTGQSITNAIATNDQLSCL 125
>11_03_0098 - 9981374-9981414,9982091-9982305,9982334-9982635
Length = 185
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 326 FLECIAREITFSLYHPTSTVKMGADGDPTSVVDTKLRVRNVTGLRVMD 183
+++C R+ L T+ ++M A G P +D L++ T L+ +D
Sbjct: 101 WVDCSGRQGLSPLQKCTAAIRMLAYGSPADSLDEYLKIGKSTSLQCLD 148
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -1
Query: 425 LRLGETKAFKE-SGFKLEWIELDAC----KSFDKNSDEFLECIAREITFSLYHPTSTVK 264
+ LG + KE +G E++E+ A K+F SD F CI R ++F + S ++
Sbjct: 160 INLGAVREVKEETGIDTEFVEVLAFRQSHKAFFDKSDLFFVCILRPLSFDITKQDSEIE 218
>06_02_0305 + 14111798-14111843,14112645-14113111,14113299-14113667
Length = 293
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Frame = +3
Query: 324 EFVAVLIKAFAGIQLNPFQLKSR-FLEGFGLAQSQTMLFESPDN-------SVQIFDILV 479
E V L + L +L S F+EGFG+ Q T+ FE + +Q FDIL+
Sbjct: 149 ETVRELTSIMSDEWLREAELSSEPFVEGFGIVQDITVYFEDREAVLDFYVFEIQDFDILI 208
Query: 480 VISIQ 494
+ I+
Sbjct: 209 ELPIE 213
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 505 TSHYCMLITTRISKICTLLSGLSNSIV*DWARPKPSRNLDLSWNGLS 365
T Y + RI+ + +GLS I +A K +NLDLS N L+
Sbjct: 415 TCSYAISTPPRITGVNMSYAGLSGDISSYFANLKEIKNLDLSHNNLT 461
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -1
Query: 689 YLIFPPSSYNLLDMFRKHGLSEEVHDKFRKMNENKYTMLVYNTL 558
Y++ + YN+ H S++++DK+R+ E T +V +L
Sbjct: 42 YMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSMVLPSL 85
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 93 VLLDHVSSFLTDHDRRSVSITSDYGRHYTCVHYSEAGNVSN 215
++L+ + L DHD+R S H TC Y G+ N
Sbjct: 323 LMLNLLMKRLDDHDKRPQSTVKALDSHVTCEVYGGTGHSGN 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,338,928
Number of Sequences: 37544
Number of extensions: 466158
Number of successful extensions: 1397
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -