Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j08r
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08) 83 3e-16
SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 30 1.8
SB_27603| Best HMM Match : ig (HMM E-Value=2.9e-10) 30 1.8
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24) 29 5.4
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0) 28 9.5
>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
Length = 79
Score = 82.6 bits (195), Expect = 3e-16
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = -1
Query: 332 DEFLECIAREITFSLYHPTSTVKMGADGDPTSVVDTKLRVRNVTGLRVMDASIMPSVIRG 153
D+ L A +I +++HP T KMG D D +VVD KLRVR ++GLR++DASIMP++ G
Sbjct: 2 DDDLIKAAGDIASTIFHPVGTCKMGQDED--AVVDHKLRVRGLSGLRIVDASIMPTITSG 59
Query: 152 NTNAPSIMIGEKGADMI 102
NTN+P+IMI EK A I
Sbjct: 60 NTNSPTIMIAEKAAAFI 76
>SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 93 VLLDHVSSFLTDHDRR--SVSITSDYGRHYTCVHYSEAGNVSNPQFRVHYGGRVTI 254
VLL + ++L +H V + ++YG +YTC H E N FR H G V +
Sbjct: 158 VLLPKLKAYLYEHGGPVIMVQVENEYGNYYTCDH--EYMNHLEITFRQHLGSNVIL 211
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = -1
Query: 479 YKDIEDLYTVIRAFKQHSLRLGETKAFKESGFKLEWIELDACKSFDKNSDEF 324
Y+++ L+ + H+ ++A+KES FK W+ + CK + ++F
Sbjct: 92 YRNLSALFRRLSVIADHTKEGQLSQAYKESDFKQYWMPDETCKECYECGEKF 143
>SB_27603| Best HMM Match : ig (HMM E-Value=2.9e-10)
Length = 135
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 147 SITSDYGRHYTCVHYSEAGNVSNPQFR--VHYGGRVTIGPHLHRTRWVV 287
+I+ D+ HYTC Y+ AG V+ + + H RT W +
Sbjct: 59 NISRDHQGHYTCTAYNRAGTVNATLYLYVAPVDQSAVVSRHASRTEWYI 107
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 337 FLSKLLQASNSIHSSLNPDSLKALVSPNLKLCCLKALITV-YKSSISL 477
FL K+L ++ ++ DSL +LVS N LC K+ + V KS I +
Sbjct: 59 FLRKVLDIRDNRENARTSDSLSSLVSSNEALCKCKSKLEVRVKSGIEI 106
>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 966
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 479 SNQHTIMACRMDSWSSITIYPQIWVSTKYCKRAWCICSR 595
SN+H + + S + P I +S Y K AW +C+R
Sbjct: 791 SNEHLRQGYTLYLFISQYLLPLIIISVTYSKMAWVLCNR 829
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 79 CVCSQCFLIMSAPFSPIMIEGALVLPLITEGIILASITLRPVTFRTLNFVSTTE 240
C+ Q + S P P + + + L GI+ AS+ L+P R + +STT+
Sbjct: 2054 CLTQQTSTLTSTPAKPAVSQPIKIARLQNPGIVTASLALKP---RQVQPISTTK 2104
>SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24)
Length = 569
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 518 KNP-FDKPLLYADYYKDIEDLYT 453
KNP FD+PL + D Y E+LYT
Sbjct: 394 KNPNFDQPLFFFDVYLPKEELYT 416
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 566 CKRAWCICSRSFYGTYRGLLRLNRAYGTCPTSCRSL-EGILSSGTACQKQESSGRLC 733
C + W C + + +G + GTC C + +G + G C ++ R+C
Sbjct: 250 CGKGWGTCGKGCRTSGKGCGTCGKGCGTCGKGCGTCGKGCGTCGAGCVMRDVMYRIC 306
>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
Length = 2232
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 635 GLSEEVHDKFRKMNENKYTMLVYNTLLKPKSAGRLLLKTKNPFDKPLLY 489
GL E D R+ +N L +L+ +L LK ++PFD LLY
Sbjct: 1605 GLKSEALDLVRQSFQN--LKLTPEAILQALHLQKLALKNRDPFDANLLY 1651
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,037,941
Number of Sequences: 59808
Number of extensions: 548316
Number of successful extensions: 1541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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