Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j08f
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   2.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   3.8  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   5.0  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   6.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.7  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.7  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -3

Query: 503 LPPSTLPRGQAHPLF----L*ARQAPSCG 429
           LPPS LPR   HPL       A+Q+PS G
Sbjct: 52  LPPSHLPRSTLHPLLSQQQQPAQQSPSLG 80


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -3

Query: 182  HCAAKNVVRACWKTGPATW*LLTIVVVNAGSHAQNILKRYLGDKTLT 42
            HC A N  ++ W+     W   T  ++  G H  NI    +   +LT
Sbjct: 1673 HCNAFNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNINSDDIAQISLT 1719


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 355 TLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGC 471
           T A+  P P   N   S ++  HT+ Q    RA  N  C
Sbjct: 223 TQASTAPNPQEINYQWSHEYRPHTQYQNNLLRAQPNVNC 261


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 188 IAHCAAKNVVRACWKTGPATW 126
           IAHC+A+  V + +  G ATW
Sbjct: 202 IAHCSAQGKVGSGFDVGAATW 222


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -2

Query: 228 LVGSIGWP*VIAGDRTLRS-QECSQGLLEDRPRYLVAVDYSSR*RWVARPKHLEALFR 58
           ++  +G P ++    TLRS ++ +QGL +D+ RY +  D+SS  +    P+ +  L +
Sbjct: 97  VIKQVGQP-LLLHQITLRSYRDRTQGLSKDQFRYALWPDFSSNSKDTLCPQPMPRLMK 153


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 558 FVVIGLVTSNVKH-QIDAAASAEHLTTWPSASLVFVGTTSPFLWFSM 421
           F  I  + +++ H ++D A S E L+  PS+SL     T P + FS+
Sbjct: 812 FYAIKCIITSITHPKLDIAESLEPLSCIPSSSL--TNFTQPLVPFSV 856


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +1

Query: 319 WKVLLVEAGGN----PTLATEIPQPYYSNMGTSEDWAYH 423
           W +L    G N    P   +E P     N+G S +WAY+
Sbjct: 516 WSMLGSAVGQNGNVGPRQISEEPMSIIFNLGISNNWAYY 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,320
Number of Sequences: 5004
Number of extensions: 47247
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)