Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j08f
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 40 0.002
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.019
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 36 0.034
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 33 0.18
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 32 0.42
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 31 0.55
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 31 0.55
03_05_0039 - 20125473-20126222 30 1.7
09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214... 29 2.9
06_03_1177 + 28174909-28175016,28176386-28176484,28177188-281772... 28 5.1
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 39.5 bits (88), Expect = 0.002
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 4/151 (2%)
Frame = +1
Query: 154 ALTTFLAAQCAI--AGD--HLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDW 321
A T+F+A + AGD + + DA + YD+I LS+ +
Sbjct: 15 AATSFVAMLACVQAAGDESYTFMKDAVQSP-QVSYYDYIIVGGGTAGCPLAATLSQ--RF 71
Query: 322 KVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLGG 501
+VLL+E GG+P I NM D T P A R G R +VLGG
Sbjct: 72 RVLLLERGGSPYDDERI-----GNMTRFADTLSDTSPSSPAQRFVSEDGVINSRPRVLGG 126
Query: 502 SSSINLMFYVRGNKADYDEWAADGNEGWSFE 594
S IN FY R + DE+ GW E
Sbjct: 127 GSCINAGFYTRAS----DEYVR--GLGWDLE 151
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 36.3 bits (80), Expect = 0.019
Identities = 28/80 (35%), Positives = 36/80 (45%)
Frame = +1
Query: 301 LSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWP 480
LSE S +VLL+E GG P + Y+ D T P+ A R G
Sbjct: 75 LSERS--RVLLLERGGLPYGNRNVSSEYHF-----ADALADTSPRSPAQRFVSEDGVVNA 127
Query: 481 RGKVLGGSSSINLMFYVRGN 540
R +VLGG S +N FY R +
Sbjct: 128 RARVLGGGSCLNAGFYTRAS 147
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 35.5 bits (78), Expect = 0.034
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Frame = +1
Query: 244 NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSE---DW 414
+Y++I LSE S +VLL+E GG P Y+NM + + D
Sbjct: 53 SYNYIVIGGGTAGCPLAATLSEHS--RVLLLERGGLP----------YANMSSEQHFTDA 100
Query: 415 AYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGN 540
T P A R G R +VLGG S +N FY R +
Sbjct: 101 LADTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRAS 142
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 33.1 bits (72), Expect = 0.18
Identities = 29/98 (29%), Positives = 42/98 (42%)
Frame = +1
Query: 247 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHT 426
YD+I LS+ +KVLL+E GG+P I ++ ++D
Sbjct: 50 YDYIIVGGGTAGCPLAATLSQ--KYKVLLLERGGSPYGNRNISHLENFHICLADDSP--N 105
Query: 427 EPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGN 540
P +G G R KVLGG +S+N FY R +
Sbjct: 106 SPSQGFI---STDGVINARAKVLGGGTSVNAGFYSRAD 140
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 31.9 bits (69), Expect = 0.42
Identities = 29/96 (30%), Positives = 38/96 (39%)
Frame = +1
Query: 247 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHT 426
YD+I LSE ++VLL+E GG+P + NM D T
Sbjct: 43 YDYIIIGGGTAGCPLAATLSE--RYRVLLLERGGSPYDDARV-----LNMAHFADVLADT 95
Query: 427 EPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVR 534
+ R G R +VLGG S IN F+ R
Sbjct: 96 SGASPSQRFVSEDGVINARPRVLGGGSCINAGFFTR 131
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +1
Query: 319 WKVLLVEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLG 498
+KVLL+E GG+P + ++G S + P + G R +VLG
Sbjct: 73 YKVLLLERGGSPYGNRNVSYMENFHIGLS-----NMAPDSASQAFISTDGVINARARVLG 127
Query: 499 GSSSINLMFYVRGN 540
G + IN FY R +
Sbjct: 128 GGTCINAGFYSRAS 141
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 31.5 bits (68), Expect = 0.55
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Frame = +1
Query: 214 DATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNPTLATEIPQPYYSN 393
DA + E+ YD+I L+ +VL++E GG P E P P +
Sbjct: 45 DAAETAAEEA-YDYIVVGGGTAGCPLAATLAGPGGGRVLVLERGGAPA---EFP-PLATA 99
Query: 394 MGTSEDWAYHTEPQEGACRAY---KNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWA 564
G A E A G R +VLGG++SIN FY R + D+
Sbjct: 100 GGFVRTLAMADPAPESDAPAQTFASEDGVPNVRARVLGGATSINAGFYSRAH-PDWFRSH 158
Query: 565 ADGNEGWSFE 594
+G E +++
Sbjct: 159 GEGGEAMNWD 168
>03_05_0039 - 20125473-20126222
Length = 249
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 463 KGCAWPRGKVLGGSSSINLMFY 528
+GCA GKVLGGS S+ FY
Sbjct: 223 RGCAKEGGKVLGGSCSLRYDFY 244
>09_04_0464 +
17820164-17820181,17820972-17821065,17821251-17821429,
17821959-17822009,17822683-17822739,17822854-17822974,
17823187-17823253,17823342-17823383,17823629-17823734,
17823864-17823974,17824248-17824319,17824423-17824524,
17824597-17824758,17824961-17825119
Length = 446
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 168 ECSQGLLEDRPRYLVAVDY 112
+C+ GL ED+PRY++ V Y
Sbjct: 231 QCTAGLPEDKPRYVMGVGY 249
>06_03_1177 +
28174909-28175016,28176386-28176484,28177188-28177238,
28177394-28177517,28177765-28177883,28177954-28178055,
28178124-28178198,28178390-28178466,28178920-28179169,
28179311-28179664,28179807-28179941,28180097-28180225
Length = 540
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +2
Query: 359 WQPRYRNLTTVIWAHQKTGLTILNHRKGLVVPTKTRDALGHV 484
W ++ + K + +++ R+GL +P + +++LGHV
Sbjct: 463 WNEEFQFMVDEAPVDDKIHIEVVSKRRGLRLPFRNKESLGHV 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,980,457
Number of Sequences: 37544
Number of extensions: 361095
Number of successful extensions: 933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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