Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j08f
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   4e-20
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27)            29   4.0  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
 Frame = +1

Query: 247 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGTSE-DWAY 420
           +D++            NRLS   D KVLL+EAG    T    +P     N+   + +W Y
Sbjct: 164 HDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYY 223

Query: 421 HTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDV 600
           HT PQ    +   N+    PRG+V GGSSS+N M Y+RG+  DYD W  +G +GWS+ D 
Sbjct: 224 HTAPQ----KHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWEREGAQGWSYADC 279

Query: 601 LPYFK 615
           LPYF+
Sbjct: 280 LPYFR 284


>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 232 LEDP--NYDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAGGNP-TLATEIPQPYYSNMGT 402
           LEDP  +YDFI            NRL+     +VL++EAG    ++   IP   +S +  
Sbjct: 4   LEDPLGDYDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAG-FSKLLV 62

Query: 403 SEDW 414
           + DW
Sbjct: 63  NPDW 66


>SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 197 ITYGQPMLPTRFSKI----QTMTSSSSELVPPDRLSPIVLAKYLTGKC 328
           +TY  P LPT F KI     T+TSS+++    D    I+L K     C
Sbjct: 141 VTYYNPDLPTHFLKITQAESTVTSSTTQSDDDDEEDQIILKKTSFSVC 188


>SB_15136| Best HMM Match : Peptidase_S13 (HMM E-Value=0.27)
          Length = 638

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 436 EGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFED 597
           +G C++      +W     LG ++ + L+    GN  D ++ AADG +  S +D
Sbjct: 478 DGYCQSETMGKASWDVSAYLGRTAHVRLVDASSGNWDDVNDGAADGADDDSCDD 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,863,728
Number of Sequences: 59808
Number of extensions: 385744
Number of successful extensions: 1047
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)