Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j08f
(616 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 85 2e-16
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 69 2e-11
D31897-1|BAA06695.1| 400|Homo sapiens Doc2 protein. 31 2.4
BC063436-1|AAH63436.1| 400|Homo sapiens DOC2A protein protein. 31 2.4
BC055284-1|AAH55284.1| 400|Homo sapiens double C2-like domains,... 31 2.4
BC041769-1|AAH41769.2| 400|Homo sapiens DOC2A protein protein. 31 2.4
BC119640-1|AAI19641.1| 340|Homo sapiens alpha-1,4-N-acetylgluco... 31 4.3
BC119639-1|AAI19640.1| 340|Homo sapiens alpha-1,4-N-acetylgluco... 31 4.3
AF141315-1|AAD48406.1| 340|Homo sapiens alpha-1,4-N-acetylgluco... 31 4.3
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 84.6 bits (200), Expect = 2e-16
Identities = 48/132 (36%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Frame = +1
Query: 247 YDFIXXXXXXXXXXXXNRLSEISDWKVLLVEAG------GNPTLATEIPQPYYSNMGTSE 408
Y ++ RL+E +VLL+EAG G+ L+ +I P +
Sbjct: 41 YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVRAGSKRLSWKIHMPAALVANLCD 100
Query: 409 D---WAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNE 579
D W YHTE Q G + WPRG+V GGSSS+N M YVRG+ DY+ W G
Sbjct: 101 DRYNWCYHTEVQRGL----DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGAR 156
Query: 580 GWSFEDVLPYFK 615
GW + LPYF+
Sbjct: 157 GWDYAHCLPYFR 168
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 68.5 bits (160), Expect = 2e-11
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +1
Query: 475 WPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFK 615
WPRG+V GGSSS+N M YVRG+ DY+ W G GW + LPYF+
Sbjct: 10 WPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFR 56
>D31897-1|BAA06695.1| 400|Homo sapiens Doc2 protein.
Length = 400
Score = 31.5 bits (68), Expect = 2.4
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -2
Query: 186 RTLRSQECSQGLLEDRPRYLVAVDYSSR*R----WVARPKHLEAL 64
+ L E QGLLE+R R L+++ YSSR R + R HL A+
Sbjct: 237 KDLEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAAM 281
>BC063436-1|AAH63436.1| 400|Homo sapiens DOC2A protein protein.
Length = 400
Score = 31.5 bits (68), Expect = 2.4
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -2
Query: 186 RTLRSQECSQGLLEDRPRYLVAVDYSSR*R----WVARPKHLEAL 64
+ L E QGLLE+R R L+++ YSSR R + R HL A+
Sbjct: 237 KELEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAAM 281
>BC055284-1|AAH55284.1| 400|Homo sapiens double C2-like domains,
alpha protein.
Length = 400
Score = 31.5 bits (68), Expect = 2.4
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -2
Query: 186 RTLRSQECSQGLLEDRPRYLVAVDYSSR*R----WVARPKHLEAL 64
+ L E QGLLE+R R L+++ YSSR R + R HL A+
Sbjct: 237 KELEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAAM 281
>BC041769-1|AAH41769.2| 400|Homo sapiens DOC2A protein protein.
Length = 400
Score = 31.5 bits (68), Expect = 2.4
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -2
Query: 186 RTLRSQECSQGLLEDRPRYLVAVDYSSR*R----WVARPKHLEAL 64
+ L E QGLLE+R R L+++ YSSR R + R HL A+
Sbjct: 237 KELEQAEQGQGLLEERGRILLSLSYSSRRRGLLVGILRCAHLAAM 281
>BC119640-1|AAI19641.1| 340|Homo sapiens
alpha-1,4-N-acetylglucosaminyltransferase protein.
Length = 340
Score = 30.7 bits (66), Expect = 4.3
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 422 ILNHRKGLV-VPTKTRDALGHVVRCSAEAAASI 517
+L+HR+G+V + T R H+V CS E+AA I
Sbjct: 45 LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77
>BC119639-1|AAI19640.1| 340|Homo sapiens
alpha-1,4-N-acetylglucosaminyltransferase protein.
Length = 340
Score = 30.7 bits (66), Expect = 4.3
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 422 ILNHRKGLV-VPTKTRDALGHVVRCSAEAAASI 517
+L+HR+G+V + T R H+V CS E+AA I
Sbjct: 45 LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77
>AF141315-1|AAD48406.1| 340|Homo sapiens
alpha-1,4-N-acetylglucosaminyltransferase protein.
Length = 340
Score = 30.7 bits (66), Expect = 4.3
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 422 ILNHRKGLV-VPTKTRDALGHVVRCSAEAAASI 517
+L+HR+G+V + T R H+V CS E+AA I
Sbjct: 45 LLSHRRGIVFLETSERMEPPHLVSCSVESAAKI 77
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,767,593
Number of Sequences: 237096
Number of extensions: 1969902
Number of successful extensions: 7586
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7585
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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