Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j08f
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   110   1e-26
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  110 bits (264), Expect = 1e-26
 Identities = 56/153 (36%), Positives = 81/153 (52%)
 Frame = +1

Query: 154 ALTTFLAAQCAIAGDHLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLL 333
           AL  F  A   + G+      ++   + D +YDFI             RLSE+S+WKVLL
Sbjct: 40  ALLNFFVATSPVIGEPCQRVHSSR--IPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLL 97

Query: 334 VEAGGNPTLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSI 513
           +EAG +     EIP      +G   DW Y+T  +  AC +     C WPRGK LGG++  
Sbjct: 98  LEAGPDEPAGAEIPSNLQLYLGGDLDWKYYTTNESHACLS-TGGSCYWPRGKNLGGTTLH 156

Query: 514 NLMFYVRGNKADYDEWAADGNEGWSFEDVLPYF 612
           + M Y RG++ DY+ W   G  GWS+++V+PY+
Sbjct: 157 HGMAYHRGHRKDYERWVQQGAFGWSWDEVMPYY 189


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 562 PIRRNRPCYLERK 524
           P+ RNRP YL  K
Sbjct: 153 PMNRNRPAYLASK 165


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 263 SELVPPDRLSPIVLAKYL 316
           +E++PP  L+  +L KYL
Sbjct: 286 AEIIPPTSLTVPLLGKYL 303


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 365 PRYRNLTTVIWAHQKTGLTILNHRKGLVVPTKTRDALGHVVR 490
           P Y   T + +      + ++  R GL +   T+D L  VV+
Sbjct: 211 PLYELSTIIFFLIPMLIILVVYTRMGLKIRNSTKDTLNSVVQ 252


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 263 SELVPPDRLSPIVLAKYL 316
           +E++PP  L+  +L KYL
Sbjct: 299 AEIIPPTSLAIPLLGKYL 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,690
Number of Sequences: 438
Number of extensions: 3838
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)