Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j05r
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 345 1e-95
Z72503-6|CAA96594.4| 273|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear recep... 29 2.6
AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear recep... 29 2.6
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 345 bits (849), Expect = 1e-95
Identities = 165/193 (85%), Positives = 177/193 (91%)
Frame = -1
Query: 581 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 402
A + PE+ LFG+WS V VSD+SL DYI VKEK AKYLPHSAGR+ +RFRKA CPIVE
Sbjct: 17 ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76
Query: 401 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGR 222
RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGR
Sbjct: 77 RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136
Query: 221 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAI 42
AGTVRRQAVDV+PLRRVNQAIWLLCTGAREAAFRN+KTIAEC+ADELINAAKGSSNSYAI
Sbjct: 137 AGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAI 196
Query: 41 KKKDELERVAKSN 3
KKKDELERVAKSN
Sbjct: 197 KKKDELERVAKSN 209
>Z72503-6|CAA96594.4| 273|Caenorhabditis elegans Hypothetical
protein C26C6.8 protein.
Length = 273
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -2
Query: 262 STLDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 89
S D + ++ G V V + P + S QSGF HV++ EIL+Q+ V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTY-IRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205
>Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical
protein ZK662.3b protein.
Length = 817
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 230
S C+ +C C + P C+VD +NG ++N + TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531
>Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical
protein ZK662.3a protein.
Length = 780
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 230
S C+ +C C + P C+VD +NG ++N + TD
Sbjct: 456 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494
>AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 817
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 230
S C+ +C C + P C+VD +NG ++N + TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531
>AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 519
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 120 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 230
S C+ +C C + P C+VD +NG ++N + TD
Sbjct: 195 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +3
Query: 69 SCIN*FICNTLCDCFNISECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD----PS 236
SC F+ N C N +EC T + + P LVD G + T T D PS
Sbjct: 200 SCKKGFLRNRQGQCVNPTECPATGSTDENPCNLVDCRTGHQCSMSTGKPTCVPDYSDTPS 259
Query: 237 RIFTGSRVD 263
+F G+ D
Sbjct: 260 PLFPGNGSD 268
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +3
Query: 9 FSNTLQLVLLFDGVGVR*TLSCIN*FICNTLCDCFNI-SECSLTCTCAQKPDCLVDSAQG 185
F N Q + F + + SC IC C I S+CS TC A P C S
Sbjct: 36 FCNCQQQPVFFAQISLP-ACSCQQAPICQPQCPRAEINSDCSATCVRACIPSC---SKST 91
Query: 186 *NINGLTTNCTRTTD 230
N +T C T D
Sbjct: 92 GNTFACSTTCESTCD 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,988,637
Number of Sequences: 27780
Number of extensions: 363963
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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