Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j05f
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 242 1e-64
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 240 6e-64
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 240 6e-64
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR... 29 2.4
At5g01940.1 68418.m00113 eukaryotic translation initiation facto... 27 7.4
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote... 27 7.4
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi... 27 7.4
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA... 27 7.4
At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi... 27 9.8
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2... 27 9.8
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 242 bits (593), Expect = 1e-64
Identities = 116/150 (77%), Positives = 133/150 (88%), Gaps = 1/150 (0%)
Frame = +1
Query: 163 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 339
E+KLF RWS DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 340 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 519
SLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRIG AG V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137
Query: 520 RRQAVDVSPLRRVNQAIWLLCTGAREAAFR 609
RRQAVD+SPLRRVNQAI+LL TGAREAAFR
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAREAAFR 167
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 240 bits (587), Expect = 6e-64
Identities = 116/156 (74%), Positives = 135/156 (86%), Gaps = 1/156 (0%)
Frame = +1
Query: 145 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 321
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 322 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 501
VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRI
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131
Query: 502 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFR 609
G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFR
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFR 167
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 240 bits (587), Expect = 6e-64
Identities = 116/156 (74%), Positives = 135/156 (86%), Gaps = 1/156 (0%)
Frame = +1
Query: 145 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 321
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 322 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 501
VERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+ NP+QV++ AI+NSGPRED+TRI
Sbjct: 72 VERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRI 131
Query: 502 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFR 609
G AG VRRQAVD+SPLRRVNQAI+L+ TGAREAAFR
Sbjct: 132 GSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFR 167
>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1556
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 104 PRQAAWL-WKPC-LYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQL 277
P + W+ WK L + PP L GV + +S + +T P KR +N+ ++ L
Sbjct: 795 PSELKWIQWKGFPLENLPPDILSRQL---GVLDLSESGVRRVKT-LPRKRGDENLKVVNL 850
Query: 278 AGMHTSVSVKPSAQSWSALQTL 343
G H + P + +AL+ L
Sbjct: 851 RGCH-GLEAIPDLSNHNALEKL 871
>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 231
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 179 ADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHTSVSV 304
A+G T+C + LCRT + R ++ LA M T VS+
Sbjct: 109 AEGTITVCLNFADLCRT---MHRKPDHVMKFLLAQMETKVSL 147
>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
low similarity to SP|P24640|LIP3_MORSP Lipase 3
precursor (EC 3.1.1.3) (Triacylglycerol lipase)
{Moraxella sp}; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 328
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 140 YHKPPTFLKSSFSADGVATMCKSLI 214
++KPP ++ S F+ D + MCK +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215
>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 836
Score = 27.5 bits (58), Expect = 7.4
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +1
Query: 211 DMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 390
D+S Y V + AK K+ +++ C I + N+LMM N G A
Sbjct: 240 DLSFNAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFE 299
Query: 391 IVKHAFEIIHLLTGENPLQVLVTAIINSG 477
I + + LL G + ++++ ++ SG
Sbjct: 300 IYESMEKTDSLLDG-STYELIIPSLAKSG 327
>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
family protein low similarity to skinny hedgehog
[Drosophila melanogaster] GI:15420842; contains Pfam
profile PF03062: MBOAT family
Length = 533
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 116 AWLWKPCLYHKPPTFLKSSFSA 181
+W W CL+ P LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447
>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 749
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 268 HSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNG 369
HS+ + + KA P V TNSL + +NNG
Sbjct: 291 HSSAKSSRLPSLKAVSPAVTSATNSLFLDHKNNG 324
>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 783
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -1
Query: 476 PELIMAVTSTCRGFSPVNK*IISNACLTIRTAISFLPLFRPC 351
P+L++ + F+P+N I AC+ + + + +L L +PC
Sbjct: 3 PKLLLCLPQGDELFNPLNTMFIQMACILVFSQLFYL-LLKPC 43
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,652,578
Number of Sequences: 28952
Number of extensions: 283213
Number of successful extensions: 671
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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