Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j04r
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    28   1.4  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    28   1.8  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   5.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   7.2  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   7.2  
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    25   9.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   9.5  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 745 VHVDCSTLRLGQFICPNPSIDQIDPDTQQFRGCIKGKEIP--SEG-EAEVECIAAD 587
           V V+     +  F   N    ++ PD +  R C+  K +P  ++G + E+ECIA +
Sbjct: 107 VKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIECIALE 162


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 459 RSNPNIPRNTDSNKAISREYPFVH 530
           R+NPNIP  T    AI + +P  H
Sbjct: 165 RTNPNIPPATSPYAAIQKAFPLFH 188


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +3

Query: 483 NTDSNKAISREYPFVHLHGSFLVNVPFFVSLHIIPSAAIHSTSASPSDGISFP--FIHPL 656
           N+ S+K  +  YP      SF  N  +   L    S     +S S S+  +FP     P+
Sbjct: 71  NSPSSKKKNIFYPIARAKHSFYFNHNWSSDLQQANSPVASYSSQSVSNDSNFPKDVTSPI 130

Query: 657 NCCVSGSI*SILGFGQINCPNLNVLQS 737
           +  +SGS  S+     IN   L   +S
Sbjct: 131 STDLSGSNPSLKSPSSINSAKLRASRS 157


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = +3

Query: 393 PRNMNPRVHSFAKPIPGYPK*KRSNPNIPR-NTDSNKAISREYPFVHLHGSFLVNVP 560
           P N NP V S +   P  PK        PR N   N  +S   P +    S +  VP
Sbjct: 297 PSNSNPAVMSLSSNFPSPPKPNNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVP 353


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 533 TW*FPCKCSIFCFITYYSISCYTLHFGFTFGRNFLSFYTSSEL 661
           +W  P K      I+YY  +C +  + F F  N L FY S  L
Sbjct: 482 SW-LPMKLKETNAISYYRKTCSSCKYPFQFFINKLPFYQSPSL 523


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 712 QFICPNPSIDQIDPDTQQFRGCIKGKEIPSEGEAEVECIAA 590
           Q + PN  I    P  ++FRG     ++P   +  +E I A
Sbjct: 190 QHVMPNAEIFSNTPPLKRFRGDAGMTQMPLRSDTSIESITA 230


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -1

Query: 745 VHVDCSTLRLGQFICPNPSIDQIDPDTQQFRGCIKGKEIPSE---GEAEVECIAAD 587
           V V+     +  F   N    ++ PD    R  +   +IP     G+ E+ECIAA+
Sbjct: 71  VKVNIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECIAAE 126


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 583 IICNETKNGTFTRKLPCKWTNGYSLEIALLLSVFLGMF--GLDRFYLGYP 440
           I+  E+KN      LPC  ++ Y L ++L + +  G     L+    G P
Sbjct: 665 ILLLESKNEVIHSSLPCSKSSLYQLSLSLCIPLIEGHLRNSLEEILFGVP 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,649,426
Number of Sequences: 5004
Number of extensions: 84995
Number of successful extensions: 214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)