Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j04r
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = -1

Query: 607 VECIAADGIICNETKNGTFTRKLPCKWTNGYSLEIALLLSVFLGMFGLDRFYLGYPGMGL 428
           + CIA +G  C + KN       P    N     +  L + F+ +   +RFY     +  
Sbjct: 107 IACIALEGARCKQNKNPKIRLPFPVIANNAKPTRMESLSNNFIALSTSERFYHNKNLIFF 166

Query: 427 AKLCTLG 407
            K C +G
Sbjct: 167 NKSCCIG 173


>SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
 Frame = -1

Query: 706 ICPNPSIDQIDPDT--QQFRGCIKGKEIPSEGEAEVECIAADGIIC---NETKNGTFTRK 542
           +C NPS+  ID DT  Q   G +K          E++     G +C    + K G    K
Sbjct: 27  MCDNPSLADIDSDTDEQDENGHVKPHFDSRSKLFELDPCDGFGKVCLVYKDVKAGVTICK 86

Query: 541 LPCKWTNGYSLEIALLLSVFLGMFGLDRFYLGYP 440
            P  W    +LE + + + F   F +   +LG P
Sbjct: 87  -PEVWLLDRALEWSFISNTFSDYFRMMIMHLGLP 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,672,152
Number of Sequences: 59808
Number of extensions: 609456
Number of successful extensions: 1374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)