Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j04r
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36950.1 68418.m04431 DegP protease, putative contains simila...    32   0.39 
At3g27270.1 68416.m03408 expressed protein                             29   4.8  
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf...    28   8.3  
At2g29410.1 68415.m03574 zinc transporter, putative similar to z...    28   8.3  

>At5g36950.1 68418.m04431 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 586

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 479 GNVWIGSLLFGISWNGFSKTMYSGIHVPRTVIRHYINSCTGCGTFRWVC 333
           G   +G+ + G+++   S     G  +P  VI+H+IN    CG +   C
Sbjct: 267 GPAIMGNKVAGVAFQNLSGAENIGYIIPTPVIKHFINGVEECGKYIGFC 315


>At3g27270.1 68416.m03408 expressed protein 
          Length = 249

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 185 LSPLIILINFEGYCSPLSGDVMPIWLW**VSLIITPNNSNSSTIIWN 325
           L+PL+I+     Y S  + DV+P W+W   +++I    + S   IWN
Sbjct: 185 LAPLLIVKMTWFYVSGGADDVIPRWVWVSWTVVIVTAVTVSILWIWN 231


>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 419

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 384 NNCPRNMNPRVHSFAKPIPGYPK*KRSNPNI 476
           NN P +   + H    P PGYP  +  NPN+
Sbjct: 10  NNIPTSFGLKQHETPLPPPGYPP-RSENPNL 39


>At2g29410.1 68415.m03574 zinc transporter, putative similar to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; similar to zinc transporter
           ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
           of the cation diffusion facilitator (CDF) family, or
           cation efflux (CE) family, PMID:11500563
          Length = 375

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 247 YANLVVVVGKSHYHSEQQ*LQHHNME*HKQTH 342
           + NLV+V+   H HS      HH+   HK  H
Sbjct: 171 FMNLVMVLWLGHNHSHHHHDHHHHHHNHKHQH 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,578,569
Number of Sequences: 28952
Number of extensions: 427428
Number of successful extensions: 967
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)