Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j04f
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy... 33 0.029
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 28 1.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.1
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 1.9
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 3.4
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 26 4.4
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch... 25 5.9
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 5.9
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 7.7
>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 162
Score = 33.1 bits (72), Expect = 0.029
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Frame = +2
Query: 137 YCSANVLLQMMKLVHSV---HVYVCLVFLLSI-TEASDEA-KVDKVHVDCSTLRLGQFIC 301
YCS + + K++ CL+ L + TEA K+ KV++ + + F
Sbjct: 64 YCSGQIPVANGKVIEGTVGDQTRQCLLNLQEVLTEAGSSLNKIVKVNIFLADM--DDFAA 121
Query: 302 PNPSIDQIDPDTQQFRGCIKGKEIP--SEG-EAEVECIAAD 415
N ++ PD + R C+ K +P ++G + E+ECIA +
Sbjct: 122 VNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEIECIALE 162
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 543 RSNPNIPRNTDSNKAISREYPFVH 472
R+NPNIP T AI + +P H
Sbjct: 165 RTNPNIPPATSPYAAIQKAFPLFH 188
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/99 (22%), Positives = 41/99 (41%)
Frame = -3
Query: 444 PFFVSLHIIPSAAIHSTSASPSDGISFPFIHPLNCCVSGSI*SILGFGQINCPNLNVLQS 265
P++ + +PS+ I S S S S + I + V+ S S+ F NL S
Sbjct: 221 PYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGS 280
Query: 264 TCTLSTLASSEASVIDSKNTKHT*TCTECTSFIICNNTF 148
T T + S + + + T + +SF ++++
Sbjct: 281 TTTTGSATVSSSPFYSNSSVIPTSVPSSVSSFTSSSSSY 319
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 1.9
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = -2
Query: 469 TW*FPCKCSIFCFITYYSISCYTLHFGFTFGRNFLSFYTSSELLCVWIYLINTWVWTNKL 290
+W P K I+YY +C + + F F N L FY S L Y+ W+ + L
Sbjct: 482 SW-LPMKLKETNAISYYRKTCSSCKYPFQFFINKLPFYQSPSLPLSATYV---WIASALL 537
Query: 289 SQS*RTAVYMHFINFSFIGS 230
S + ++ F+ S
Sbjct: 538 SVQPGNGSFNIMLSLKFVSS 557
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 3.4
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = -3
Query: 519 NTDSNKAISREYPFVHLHGSFLVNVPFFVSLHIIPSAAIHSTSASPSDGISFP--FIHPL 346
N+ S+K + YP SF N + L S +S S S+ +FP P+
Sbjct: 71 NSPSSKKKNIFYPIARAKHSFYFNHNWSSDLQQANSPVASYSSQSVSNDSNFPKDVTSPI 130
Query: 345 NCCVSGSI*SILGFGQINCPNLNVLQS 265
+ +SGS S+ IN L +S
Sbjct: 131 STDLSGSNPSLKSPSSINSAKLRASRS 157
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 290 QFICPNPSIDQIDPDTQQFRGCIKGKEIPSEGEAEVECIAA 412
Q + PN I P ++FRG ++P + +E I A
Sbjct: 190 QHVMPNAEIFSNTPPLKRFRGDAGMTQMPLRSDTSIESITA 230
>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +2
Query: 257 VHVDCSTLRLGQFICPNPSIDQIDPDTQQFRGCIKGKEIPSE---GEAEVECIAAD 415
V V+ + F N ++ PD R + +IP G+ E+ECIAA+
Sbjct: 71 VKVNIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECIAAE 126
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 419 IICNETKNGTFTRKLPCKWTNGYSLEIALLLSVFLGMF--GLDRFYLGYP 562
I+ E+KN LPC ++ Y L ++L + + G L+ G P
Sbjct: 665 ILLLESKNEVIHSSLPCSKSSLYQLSLSLCIPLIEGHLRNSLEEILFGVP 714
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 418 SISCYTLHFGFTFGRNFLSFYT---SSELLCVWIYLINTWV 305
+IS + H+ + S+Y S L+C+++YLI W+
Sbjct: 33 AISIFPTHYDQPYLNEAPSWYKYSLESGLVCLYLYLIYRWI 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,901
Number of Sequences: 5004
Number of extensions: 53091
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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