Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j04f
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_34002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 115  FHLQFKTVLFCECVIANDETCTFCT 189
            FHL FKT ++C   +   E  T+CT
Sbjct: 1224 FHLDFKTCIYCTLSVRLREGLTYCT 1248


>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 113 ISICNLKPYCSANVLLQMMKLVHSVHVYVCLVFLLSITEASDEAKVDKVH 262
           +S+   +PYC  +    M+K  H+ H  V +    S+    +EA ++ +H
Sbjct: 647 MSVPRSRPYCKLSFACSMLKQDHTKHQAVFVGCPSSVEVCEEEASLEMLH 696


>SB_37949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
 Frame = +2

Query: 296 ICPNPSIDQIDPDT--QQFRGCIKGKEIPSEGEAEVECIAADGIIC---NETKNGTFTRK 460
           +C NPS+  ID DT  Q   G +K          E++     G +C    + K G    K
Sbjct: 27  MCDNPSLADIDSDTDEQDENGHVKPHFDSRSKLFELDPCDGFGKVCLVYKDVKAGVTICK 86

Query: 461 LPCKWTNGYSLEIALLLSVFLGMFGLDRFYLGYP 562
            P  W    +LE + + + F   F +   +LG P
Sbjct: 87  -PEVWLLDRALEWSFISNTFSDYFRMMIMHLGLP 119


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +2

Query: 98   SQSKLISICNLKP--YCSANVLLQMMKLVH-SVHV-YVCLVFLLSITEASDEAKVDKVHV 265
            S+S ++SI       +C++   + ++ L H +V V +V   F   +    ++AK+DK++V
Sbjct: 1055 SKSSIMSIATTANSLWCASANKIHVIDLEHETVKVCHVVFTFCTHVDSQLEQAKLDKLYV 1114

Query: 266  DCST 277
             C T
Sbjct: 1115 SCMT 1118


>SB_36906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 442 IFCFITYYSISCYTLHFGFTFGRNFLSFYTSSELL 338
           +  F+T ++ + +T  +GFTFG+     + SS L+
Sbjct: 46  VLAFLTCFACALFTCLYGFTFGKTKSEEWISSMLV 80


>SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 540 SNPNIPRNTDSNKAISREYPFVHLHGSFLVNVPFFVSLHIIPSAAIHSTSASPS 379
           S   I +N  ++ A+  E P  HLH    +N+  F+  +I  +  I  TS SP+
Sbjct: 109 SRIEIEKNKITHFALLIEEPEAHLHPQLQLNLFNFIKENIKENTQIFITSHSPT 162


>SB_34002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 206 VFLLSITEASDEAKVDKVHVDCSTLRLGQFICPNPSIDQIDPDTQ 340
           VF+  +   S + K DKV +    LR+G F+     +D   PD Q
Sbjct: 22  VFVAHLNINSLQNKFDKVLLMNEKLRMGVFVITETKLDSSYPDVQ 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,511
Number of Sequences: 59808
Number of extensions: 358817
Number of successful extensions: 889
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)