Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j04f
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical ... 58 6e-09
AL161712-16|CAC35892.1| 329|Caenorhabditis elegans Hypothetical... 57 8e-09
L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical p... 44 6e-05
AC087232-6|AAK09081.1| 61|Caenorhabditis elegans Hypothetical ... 31 0.44
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 29 2.3
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 29 2.3
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 29 3.1
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 29 3.1
U64859-11|AAC69097.2| 337|Caenorhabditis elegans Hypothetical p... 28 5.4
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 27 7.1
AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical ... 27 7.1
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.4
AF025469-4|AAG00032.1| 270|Caenorhabditis elegans Hypothetical ... 27 9.4
>AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical
protein C41D11.9 protein.
Length = 195
Score = 57.6 bits (133), Expect = 6e-09
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +2
Query: 398 ECIAADGIICNETKNGTFTRKLPCKWTNGYSLEIALLLSVFLGMFGLDRFYLG 556
+C A +IC +N F +++PC W++GYS ++LSV LG FG DRFYLG
Sbjct: 105 KCSAHSSVICMGQRN--FYKRIPCNWSSGYSWTKTMILSVVLGGFGADRFYLG 155
>AL161712-16|CAC35892.1| 329|Caenorhabditis elegans Hypothetical
protein Y66D12A.21 protein.
Length = 329
Score = 57.2 bits (132), Expect = 8e-09
Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Frame = +2
Query: 263 VDCSTLRLGQFICPNPSIDQIDPDTQQFRGCIKGKEIPSEGEAEVECIAADGIIC-NETK 439
V C L Q++C N ++D I TQQ C I +V C A+ I C + +
Sbjct: 20 VKCDDLDPNQYLCKNYAVDTI---TQQSVTCAADNSI------QVMCETAEHIKCVGKDQ 70
Query: 440 NGTFTRKLP--CKWTNGYSLEIALLLSVFLGMFGLDRFYLGY 559
G F R +P C + S +LLS+FLG FG+DR YLGY
Sbjct: 71 FGIFNRTVPSACHYGAHVSYTTTVLLSIFLGFFGIDRIYLGY 112
>L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical
protein C02F5.13 protein.
Length = 210
Score = 44.4 bits (100), Expect = 6e-05
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Frame = +2
Query: 329 PDTQQFRG---CIK--GKEIPSEGEAEVECIAADGIICNETKNGTFTRKLPCKWTNGYSL 493
P + FR C+K G V+C I C+ + TFT+ PC NG+
Sbjct: 89 PANESFRNEGKCLKMGGYRAEDVEFTNVKCRVLPCIECHGPR--TFTKSTPCIIYNGHYF 146
Query: 494 EIALLLSVFLGMFGLDRFYLGY 559
LL S+FLG+ +DRF LGY
Sbjct: 147 LTTLLYSIFLGVVAVDRFCLGY 168
>AC087232-6|AAK09081.1| 61|Caenorhabditis elegans Hypothetical
protein Y92H12BR.4 protein.
Length = 61
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 566 FQDIPNKSDPIQTFPGIQIVIKQFLENIHSSIYMVVSL*MFHFLFHYILF 417
FQ++ N S IQ F QI++ LEN+ I + L + HF H +F
Sbjct: 12 FQNLDNNSLSIQVFNN-QIIVYNILENVRGDINDRLKLRVSHFDNHLCIF 60
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 386 EAEVECIAADGIICNETKNGTFTRKLPCKWTNG 484
E E C C E KNGT T K P K G
Sbjct: 460 ECEKTCSGVPNQFCIEAKNGTATTKAPAKCLPG 492
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 386 EAEVECIAADGIICNETKNGTFTRKLPCKWTNG 484
E E C C E KNGT T K P K G
Sbjct: 460 ECEKTCSGVPNQFCIEAKNGTATTKAPAKCLPG 492
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 206 VFLLSITEASDEAKVDKVHVDCSTLRLGQFICPN 307
VFL+ + A E K++K ++D +++GQ + P+
Sbjct: 456 VFLVRLVFADPEYKINKKNIDVGQIQVGQSLLPS 489
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 206 VFLLSITEASDEAKVDKVHVDCSTLRLGQFICPN 307
VFL+ + A E K++K ++D +++GQ + P+
Sbjct: 454 VFLVRLVFADPEYKINKKNIDVGQIQVGQSLLPS 487
>U64859-11|AAC69097.2| 337|Caenorhabditis elegans Hypothetical
protein R09F10.8 protein.
Length = 337
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 332 DTQQFRGCIKGKEIPSEGEAEVECIAADGIICNETKNGTFTRKL 463
DT F GKEIPS + + ++G+ NE+ T T KL
Sbjct: 117 DTNTFICSFVGKEIPSNFRMQSNFVVSEGLFANESNIPT-TYKL 159
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Frame = -1
Query: 209 IPNIRRRVQNVQVSSFAITHSQNNTVLNCKWK--LVYFD**NLRRIF----YYFIKN-LK 51
IP + R ++ + F H++ T W +V+F ++F YYFIKN L
Sbjct: 38 IPALDRFAEDTSMLGFRYLHTRYKTWFRVLWGFVVVFFIGLTFYQVFERVTYYFIKNPLT 97
Query: 50 GNRVYET 30
R YET
Sbjct: 98 TRRSYET 104
>AC024817-2|AAU87810.1| 520|Caenorhabditis elegans Hypothetical
protein Y54G2A.38 protein.
Length = 520
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 409 CYTLHFGFTFGRNFL-SFYTSSELLCVWIYLINTWVWT 299
CY LHFG + + F+ + + ++ Y +N +W+
Sbjct: 95 CYFLHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWS 132
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 409 CYTLHFGFTFGRNFL-SFYTSSELLCVWIYLINTWVW 302
CY LHFG + + F+ + + + ++ Y +N +W
Sbjct: 323 CYFLHFGNAYFQYFMVTLMSLNRTTSIFFYFVNEKIW 359
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 287 GQFICPNPSIDQIDPDTQQFRGCIKGKEIPSEGEAEVECIAA 412
G+F P + + D + IK +IP +GE +EC AA
Sbjct: 14434 GEFSEPTIPVVVLADDAPRVLKAIKPVKIPKKGELRLECHAA 14475
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 287 GQFICPNPSIDQIDPDTQQFRGCIKGKEIPSEGEAEVECIAA 412
G+F P + + D + IK +IP +GE +EC AA
Sbjct: 14434 GEFSEPTIPVVVLADDAPRVLKAIKPVKIPKKGELRLECHAA 14475
>AF025469-4|AAG00032.1| 270|Caenorhabditis elegans Hypothetical
protein W09B6.5 protein.
Length = 270
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 383 GEAEVECIAADGIIC--NETKNGTFTRK 460
G E+ C AD + NETKNG F +K
Sbjct: 127 GRLEINCHVADAVHRPKNETKNGEFQKK 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,212
Number of Sequences: 27780
Number of extensions: 290091
Number of successful extensions: 803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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