Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j04f
         (566 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.7  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   6.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.6  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 522 RNTDSNKAISREYPFVHLHGSFLVNV 445
           +N ++N   S ++   HL G+  VNV
Sbjct: 116 KNQNNNHYTSHQHLRTHLRGTLTVNV 141


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 130 KTVLFCECVIAN 165
           K  L+CEC++ N
Sbjct: 58  KVQLYCECILKN 69


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 200 CLVFLLSITEASDEAKVDKVHVDCSTLRLG 289
           C++   +    S ++K + VH+  STL  G
Sbjct: 252 CVIAFATSALVSKDSKFNMVHIQNSTLAGG 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,604
Number of Sequences: 438
Number of extensions: 3566
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)