BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10j03r (365 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 1.8 Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical pr... 28 2.4 DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 2.4 AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 2.4 U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 27 3.1 AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 27 3.1 AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 4.1 AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 4.1 AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 4.1 AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 4.1 U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical pr... 27 5.4 AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 27 5.4 Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical pr... 26 7.2 AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical... 26 7.2 Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 26 9.5 Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p... 26 9.5 Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical p... 26 9.5 Z66513-1|CAA91329.3| 426|Caenorhabditis elegans Hypothetical pr... 26 9.5 U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p... 26 9.5 U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical pr... 26 9.5 AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 26 9.5 AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ... 26 9.5 AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical ... 26 9.5 >U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein F40H6.5 protein. Length = 1288 Score = 28.3 bits (60), Expect = 1.8 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = -3 Query: 150 TRRPT---LNHGRLTGTSSTSSILPSETTLRRNLLPPNT 43 T+RPT L G + +SST S S TT LPP T Sbjct: 950 TQRPTSPILTSGATSTSSSTESTTTSPTTSTTTTLPPTT 988 >Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical protein F10A3.5 protein. Length = 324 Score = 27.9 bits (59), Expect = 2.4 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = -2 Query: 211 CGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY--RNKQYKFYSPIRDYSKEESPAPKY 44 C A+++ L L +P +++ PE WE+Y + +Y + P Y+ + K+ Sbjct: 141 CNSAIWFFCFLVLNSPSPMKDEELFPEFWESYCLKPNEYTYTGPHYYYTDNSTGEWKF 198 >DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1797 Score = 27.9 bits (59), Expect = 2.4 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = -2 Query: 190 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 47 +LR +L N T A RNKQ+ YS D S+ APK Sbjct: 728 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 775 >AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 1, isoform b protein. Length = 978 Score = 27.9 bits (59), Expect = 2.4 Identities = 17/48 (35%), Positives = 21/48 (43%) Frame = -2 Query: 190 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAPK 47 +LR +L N T A RNKQ+ YS D S+ APK Sbjct: 786 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 833 >U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of presynaptic morphologyprotein 1 protein. Length = 3766 Score = 27.5 bits (58), Expect = 3.1 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +1 Query: 100 CTACSCKPPMVQGWSSCSKIHQDYAKP----DAEYRTQLHHILSPHIHTEGSKPYASSNL 267 C +CKP +++ + C K+ ++ K D + + H IL+ P+A + Sbjct: 39 CAENTCKPDILRVPAHCGKLDKEEEKSKTPLDQQQQINFHDILNSKFVVGPPSPFALVAI 98 Query: 268 RGSVLA 285 S+LA Sbjct: 99 AKSILA 104 >AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical protein F07B7.12 protein. Length = 1900 Score = 27.5 bits (58), Expect = 3.1 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +1 Query: 100 CTACSCKPPMVQGWSSCSKIHQDYAKP----DAEYRTQLHHILSPHIHTEGSKPYASSNL 267 C +CKP +++ + C K+ ++ K D + + H IL+ P+A + Sbjct: 39 CAENTCKPDILRVPAHCGKLDKEEEKSKTPLDQQQQINFHDILNSKFVVGPPSPFALVAI 98 Query: 268 RGSVLA 285 S+LA Sbjct: 99 AKSILA 104 >AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1831 Score = 27.1 bits (57), Expect = 4.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 121 AYRNKQYKFYSPIRDYSKEESPAPK 47 A RNKQ+ YS D S+ APK Sbjct: 785 AVRNKQFNMYSENGDLSRPSDSAPK 809 >AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 1, isoform a protein. Length = 1562 Score = 27.1 bits (57), Expect = 4.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 121 AYRNKQYKFYSPIRDYSKEESPAPK 47 A RNKQ+ YS D S+ APK Sbjct: 843 AVRNKQFNMYSENGDLSRPSDSAPK 867 >AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 1, isoform c protein. Length = 1913 Score = 27.1 bits (57), Expect = 4.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 121 AYRNKQYKFYSPIRDYSKEESPAPK 47 A RNKQ+ YS D S+ APK Sbjct: 896 AVRNKQFNMYSENGDLSRPSDSAPK 920 >AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 1, isoform d protein. Length = 1861 Score = 27.1 bits (57), Expect = 4.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 121 AYRNKQYKFYSPIRDYSKEESPAPK 47 A RNKQ+ YS D S+ APK Sbjct: 815 AVRNKQFNMYSENGDLSRPSDSAPK 839 >U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical protein T19D12.7 protein. Length = 400 Score = 26.6 bits (56), Expect = 5.4 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +1 Query: 142 SSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVLA 285 S C + Y D Y T LHH+L IH + P +S + RG ++ Sbjct: 69 SMCHLLRSSYPDYDISYLTSLHHLL---IHF--NIPSSSYSARGKTMS 111 >AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical protein Y50D7A.1 protein. Length = 791 Score = 26.6 bits (56), Expect = 5.4 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +2 Query: 38 SLVFGGRRFLLRVVSDGRIELVLL-VPVSLPWFRVGLLVPRYIRITQSQTQSIEHSSTTS 214 SLV G + +L +D R VP L +F RY+ T + SI HS+ S Sbjct: 200 SLVTWGTQLILFGGNDNRRRCPFANVPPELHYFDTSTSTWRYVPATGNSPSSIGHSAVVS 259 Query: 215 YPHTYI 232 + ++ Sbjct: 260 GDYMFV 265 >Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical protein ZK593.2 protein. Length = 152 Score = 26.2 bits (55), Expect = 7.2 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -3 Query: 195 SILCVWLCVILMYLGTR-RPTLNHGRLTGTSST 100 S+LCV+LC+++ TR RP+ H T T Sbjct: 5 SLLCVFLCILISAPFTRSRPSEEHPMYTAARLT 37 >AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical protein Y102A5C.36 protein. Length = 213 Score = 26.2 bits (55), Expect = 7.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 210 HPIPTHTYRGIKALCFFKLERLSPCILNYLI 302 H IP G+K LCFF +S IL +L+ Sbjct: 5 HLIPRALLLGLKNLCFFVFPFVSFIILMFLV 35 >Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein C10C6.1 protein. Length = 1565 Score = 25.8 bits (54), Expect = 9.5 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = -3 Query: 150 TRRPTLNHGRLTGTSSTSSILPSETTLRRNLLP 52 TR+P+ RL+G +T+ I+P ++ ++ +P Sbjct: 1293 TRKPSALLRRLSGKRATNDIVPGSSSQKQAFMP 1325 >Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical protein Y37A1C.1c protein. Length = 1210 Score = 25.8 bits (54), Expect = 9.5 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -3 Query: 237 LCMYVWG*DVVELCSILCVWLC--VILMYLGTRRPTLNHGRLTGTSSTSSIL 88 LC++V +++ S L + C I MYL R+P +N G T S + L Sbjct: 672 LCVFVMF--IIDWFSALVTFFCFGAIFMYLLHRKPDVNWGSSTQAHSYKNAL 721 >Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical protein Y37A1C.1a protein. Length = 972 Score = 25.8 bits (54), Expect = 9.5 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -3 Query: 237 LCMYVWG*DVVELCSILCVWLC--VILMYLGTRRPTLNHGRLTGTSSTSSIL 88 LC++V +++ S L + C I MYL R+P +N G T S + L Sbjct: 672 LCVFVMF--IIDWFSALVTFFCFGAIFMYLLHRKPDVNWGSSTQAHSYKNAL 721 >Z66513-1|CAA91329.3| 426|Caenorhabditis elegans Hypothetical protein F54D5.2 protein. Length = 426 Score = 25.8 bits (54), Expect = 9.5 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -2 Query: 193 YTLRLALRNPDVSWNK 146 YTL +N D+SWNK Sbjct: 27 YTLPFVTKNNDISWNK 42 >U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical protein C32E8.11 protein. Length = 1927 Score = 25.8 bits (54), Expect = 9.5 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +1 Query: 16 TGSILEKQFSIWGQEIP 66 +GS+LEK F++W IP Sbjct: 1735 SGSMLEKLFTMWSSSIP 1751 >U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical protein C03B1.13 protein. Length = 436 Score = 25.8 bits (54), Expect = 9.5 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -2 Query: 223 VGIGCGGAVFYTLRLALRNPDVSW 152 +GIGCGG ++ L L +P+ +W Sbjct: 320 IGIGCGGPAWF-LTSELVDPEYAW 342 >AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein protein. Length = 1565 Score = 25.8 bits (54), Expect = 9.5 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = -3 Query: 150 TRRPTLNHGRLTGTSSTSSILPSETTLRRNLLP 52 TR+P+ RL+G +T+ I+P ++ ++ +P Sbjct: 1293 TRKPSALLRRLSGKRATNDIVPGSSSQKQAFMP 1325 >AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical protein Y37A1C.1c protein. Length = 1210 Score = 25.8 bits (54), Expect = 9.5 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -3 Query: 237 LCMYVWG*DVVELCSILCVWLC--VILMYLGTRRPTLNHGRLTGTSSTSSIL 88 LC++V +++ S L + C I MYL R+P +N G T S + L Sbjct: 672 LCVFVMF--IIDWFSALVTFFCFGAIFMYLLHRKPDVNWGSSTQAHSYKNAL 721 >AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical protein Y37A1C.1a protein. Length = 972 Score = 25.8 bits (54), Expect = 9.5 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -3 Query: 237 LCMYVWG*DVVELCSILCVWLC--VILMYLGTRRPTLNHGRLTGTSSTSSIL 88 LC++V +++ S L + C I MYL R+P +N G T S + L Sbjct: 672 LCVFVMF--IIDWFSALVTFFCFGAIFMYLLHRKPDVNWGSSTQAHSYKNAL 721 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,208,951 Number of Sequences: 27780 Number of extensions: 197235 Number of successful extensions: 594 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 594 length of database: 12,740,198 effective HSP length: 73 effective length of database: 10,712,258 effective search space used: 514188384 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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