Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j02r
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 35 0.014
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.23
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.31
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.71
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 29 0.71
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 0.94
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.6
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.0
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.0
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 5.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 6.6
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 6.6
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 8.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.7
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 34.7 bits (76), Expect = 0.014
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -3
Query: 405 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSST--VIAPLT 232
VTP P S S PP +T T S P +++ S T + T +ST V +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 231 PSNTTGTLSPP 199
P++T+ T +PP
Sbjct: 361 PTSTSSTSTPP 371
Score = 33.9 bits (74), Expect = 0.025
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -3
Query: 405 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP-LT 232
+TP P S S+P P T+ + S P T ST + + + S+T + P +
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 231 PSNTTGTLSPP 199
P++T+ T +PP
Sbjct: 307 PTSTSSTSTPP 317
Score = 32.3 bits (70), Expect = 0.076
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 399 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS- 226
P T + S P P T+ TS S PP NST + +T V + SST P S
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPAST 322
Query: 225 NTTGTLSPP 199
++TGT S P
Sbjct: 323 SSTGTSSSP 331
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 405 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTV-IAPLTP 229
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 228 SNTTGT 211
++ T
Sbjct: 415 PTSSST 420
Score = 29.5 bits (63), Expect = 0.54
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 405 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 229
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 228 S 226
+
Sbjct: 250 T 250
Score = 29.1 bits (62), Expect = 0.71
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 414 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 238
L++ TP T P S S W TT T S T+ST +T T ++ +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 237 LTPSNTTGTLS 205
T S++T T S
Sbjct: 658 STSSSSTATSS 668
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 408 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT--VSSTVIAPL 235
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLST 389
Query: 234 TPSNTTGTLSPP 199
+ S TT T PP
Sbjct: 390 STSCTTSTSIPP 401
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 408 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMT--VSSTVIAPL 235
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 276 SPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPST 335
Query: 234 TPSNTTGTLSPP 199
+ S TT T PP
Sbjct: 336 STSCTTSTSIPP 347
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.23
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 296 QVLFVFGGHDLEVYSVVFQHGGK 364
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 345 TTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 199
+T TS PP T+ ++ T ++T + P T NTT T +PP
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPP 111
Score = 28.7 bits (61), Expect = 0.94
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -3
Query: 363 LPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 199
+PP + T+ + PP T+ ++ + ++T P T N+T T+ PP
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPP 124
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = -3
Query: 405 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPS 226
V P + + ++PP T+ T+ + PP T+ ++ T S+T + P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 225 NTTGTLSPP 199
T T+ PP
Sbjct: 128 VNTTTVVPP 136
Score = 28.3 bits (60), Expect = 1.2
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = -3
Query: 411 HSVTPKTKPARKSPGSLPPCWKTTEY--TSRSCPPKT--NST*SSITRKVLVMTVSSTVI 244
H+ T T P S + TT T+ + PP T NST + + V T +TV+
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVV 134
Query: 243 APLTPSNTTGTLSPP 199
P T NTT T+ PP
Sbjct: 135 PPTTHVNTT-TVVPP 148
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.71
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 679 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 536
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 29.1 bits (62), Expect = 0.71
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 84 LRCAPRLHGLRWRPYLHQVS*HXLYSRL 167
L A +LHG+RW Y H+VS +++ L
Sbjct: 182 LAFASKLHGMRWFMYTHKVSAFLVFTSL 209
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 191 FVHGGLKVPVVFEGVSGAITVDDTVIT 271
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 712 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 596
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 276 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 425
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 348 KTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 199
+TTE T+ P T ++ S T ++ T T I P+ P N + ++S P
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAP 899
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.0
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = +2
Query: 254 DDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLL 433
D + + +R+ + GG E YS + Q KL + N VVLL
Sbjct: 1233 DTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLL 1287
Query: 434 VDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 541
D + G + + L LL +D +++ +V FDDF+
Sbjct: 1288 QD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 323 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 424
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 475 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 383
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 242 AITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 364
A V+D I R + + + +V + GH+ E+YS+ F GK
Sbjct: 350 ATGVEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 8.7
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = -2
Query: 532 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 368
+K Y P + + VK IN+ D LKL + N + I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 367 KFTPVLENNRVYFKIMSTEDKQYL-KLDN-TKGSSDDRIIYGDSTADTFKH 221
P+L + + F + Y K +N SS D + DS A+ KH
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSYYPKSENRVYYSSFDLELNLDSPAE-LKH 244
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = -2
Query: 493 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 314
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 313 EDKQYLK 293
+ ++K
Sbjct: 202 DGFDFIK 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,805
Number of Sequences: 5004
Number of extensions: 67247
Number of successful extensions: 287
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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