Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j01r
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   1.1  
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr...    30   1.4  
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    30   1.9  
At5g63450.1 68418.m07965 cytochrome P450, putative                     28   7.7  

>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 530 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 438
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 387

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
 Frame = -2

Query: 621 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 451
           +E IT V+  L R++    ++   Q   +G K  + DC   EFRL   I  +     MY 
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320

Query: 450 RDGL-ALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQY 280
            +G+ ALT+  D       PA  D  D       +K   L+E++ +  +I  TE N++
Sbjct: 321 -EGIRALTIDKD-NSPKWNPATLDEVDDEKINSVFK---LFEDDDIELQIPETEENRW 373


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 327 NNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIY 148
           N+K ++K    +  +YL +    N       F +NS+++FR +WY    + D D L  I+
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 381 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 262
           G+D TS  ++W    L +N+ V  KIL+  RN+   LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,830
Number of Sequences: 28952
Number of extensions: 282121
Number of successful extensions: 1037
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)