Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10j01f
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 34 0.019
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.10
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 29 0.54
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.54
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 29 0.71
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 2.2
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 2.9
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.9
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 25 8.8
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 8.8
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 8.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.9 bits (74), Expect = 0.019
Identities = 36/172 (20%), Positives = 74/172 (43%)
Frame = +3
Query: 99 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 278
+P + T S++TI+SS+P+T+ + + T +S + TT T ST
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560
Query: 279 INFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATART 458
+ + S P TSS S+ ++S + CT++T ++++ +T P +T+ +
Sbjct: 561 VPYTS-TPVTSSNYTISSSTPVTSTPVTTTNCTTST------SVLYTSTPITSPNSTSSS 613
Query: 459 RQARESAGS*SLCGXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTAS 614
+ + G + +T+T + T + +I S S+ +
Sbjct: 614 STQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTA 665
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.5 bits (68), Expect = 0.10
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 122 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 289
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
Query: 290 LQGSKD 307
+ K+
Sbjct: 170 SKYIKE 175
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 473 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 583
+ +K I L++NN+ KILN R V+ VGT NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.54
Identities = 37/130 (28%), Positives = 56/130 (43%)
Frame = +3
Query: 105 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 284
+SLT+ +S ++ASSS T+ L +SI + + S S TT + S+ N
Sbjct: 107 SSLTSSSATSSSLASSST-TSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTN 165
Query: 285 FGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQ 464
+ A TSS S LSS +S S S++++ AT + L + A
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNS---TTSATATSSSLSSTAASNSA 222
Query: 465 ARESAGS*SL 494
S S SL
Sbjct: 223 TSSSLASSSL 232
Score = 26.2 bits (55), Expect = 3.8
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 99 IPTSLTTFWRSSFTIASSSPITTVRLKRA-SIYTRRRRAKSSQMS*TN*YETTR*TAWST 275
+PTS TF S F S P ++ + S SS + T+ T+ + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731
Query: 276 PINFGSRAPRTSSGIVSQLSSDLSS 350
P++ S P + S S+LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 28.7 bits (61), Expect = 0.71
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 376 VHKLNRVFGEDKSELNWETIPDDVL 302
+H + EDKS+L +ETIPD VL
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPDPVL 33
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 131 QLYNSVVVADYDSAVEKSKHLYEEKKS 211
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 291 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 392
S P T S + S LSS SSP T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 458 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 574
K SP+V+WK +W + K K +++ +LG G++
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 321 VSQLSSDLSSPKTRLSLCTSATV 389
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 203 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 295
K+ +T+ NKL+ ++ + +YAY L LQ
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 514 DLVVLPQSD*LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVA 380
DLV+L D +PAD R + + S + N ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 391 ETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKL 281
E V +H L+ F ED+ E E I DV A++PKL
Sbjct: 2004 ELVTTLHSLDVFFAEDRDE---ELIQPDV--AVDPKL 2035
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 377 KRDGLALTLSNDVQGDDGRPAYGD 448
K++G+ + ND G++G AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,583
Number of Sequences: 5004
Number of extensions: 42582
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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