Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10j01f
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.11 
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f...    31   0.81 
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr...    30   1.1  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    29   3.3  
At5g63450.1 68418.m07965 cytochrome P450, putative                     28   5.7  
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica...    27   7.5  
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ...    27   7.5  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   7.5  
At1g59077.1 68414.m06670 hypothetical protein                          27   7.5  
At1g58766.1 68414.m06659 hypothetical protein                          27   7.5  
At5g45460.1 68418.m05585 expressed protein                             27   10.0 
At5g11540.1 68418.m01346 FAD-binding domain-containing protein s...    27   10.0 
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   10.0 
At1g20410.1 68414.m02545 expressed protein                             27   10.0 

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 29  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 208
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 209 SEVITNV 229
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
           family protein contains Pfam profile PF01812
           5-formyltetrahydrofolate cyclo-ligase
          Length = 354

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 300 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 392
           PR  +G  S L SDL  P+T +  CTS  V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201


>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 387

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
 Frame = +2

Query: 209 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 379
           +E IT V+  L R++    ++   Q   +G K  + DC   EFRL   I  +     MY 
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320

Query: 380 RDGL-ALTLSNDVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQY 550
            +G+ ALT+  D       PA  D  D       +K   L+E++ +  +I  TE N++
Sbjct: 321 -EGIRALTIDKD-NSPKWNPATLDEVDDEKINSVFK---LFEDDDIELQIPETEENRW 373


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 12   LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 170
            LG    +T+Q    + +    +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1065 LGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 449 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 568
           G+D TS  ++W    L +N+ V  KIL+  RN+   LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
           to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
          Length = 802

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 530 NTERNQYLVLGVGTNWNGDHMAF 598
           N   N  L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292


>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 506

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 449 GKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVG 568
           G+D TS  ++W    L EN+ V  KIL  E +  + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 122  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 229
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 122 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 229
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 122 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 229
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At5g45460.1 68418.m05585 expressed protein
          Length = 703

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +2

Query: 89  YAADSDVPNDILEEQLYNSVVVADYDSAV----EKSKHLYEEKKSEVITNVVNKLIRNNK 256
           +A   ++P D   E+L   V   DYD ++      ++  Y+E K E I    ++  + N 
Sbjct: 611 WALRDNLPEDAEREKLVRYVTKVDYDQSLLMWHIATEFCYQEHKKETIPEGYDEQCKQNH 670

Query: 257 MNCMEYAYQLWLQGSKDIVRDCF 325
           +   + +  L  Q     VR C+
Sbjct: 671 LRLHDVSPDLATQSD---VRGCW 690


>At5g11540.1 68418.m01346 FAD-binding domain-containing protein
           similar to hypothetical protein [Oryza sativa
           (japonica)][GI:18844891]; contains PF01565 FAD binding
           domain
          Length = 585

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 412 IIAQRQSETVALVHKLNRVFGEDKSELNWETIPDDVLGALEPKLIGVLHAVHLVVSYQFV 233
           ++   QSE  A V +L    G D + LN   +   VLG +    + +  A    V+Y F 
Sbjct: 186 VVPANQSEGFAKVVRLEE--GRDDTLLNAVKVSLGVLGVISKVKLSIEKAFKRSVTYNFT 243

Query: 232 HDI 224
            D+
Sbjct: 244 SDV 246


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 139 VKLLLQNVVRDVGICSIQRCH 77
           +K  ++N+++  G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747


>At1g20410.1 68414.m02545 expressed protein
          Length = 504

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = +2

Query: 56  IVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 235
           I I+CL +  L    SDV  ++++    +S  VA     V++ +H ++    EV  +V +
Sbjct: 97  ICIVCLGI--LQFVFSDVKKELVKSDS-SSDYVARITDLVKQDRHEFDSFGLEV--SVPS 151

Query: 236 KLIRNNKMNCM----EYAYQLWLQGSKDIVRDCFPV 331
            ++ N +        +Y+ ++WLQ  K  V+D   V
Sbjct: 152 TIMENERALLSYLKGKYSTEVWLQRDKISVKDALKV 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,196,239
Number of Sequences: 28952
Number of extensions: 229235
Number of successful extensions: 920
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)