Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i24r
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    29   0.55 
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    28   1.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   6.7  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   6.7  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   6.7  

>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 239 RERNETYVQIVLISCRNQGIAVEPPTQRHLSDGHGTVPGT 120
           + R E+Y Q++   C NQG+AV+ P  RH+      +P T
Sbjct: 202 KAREESY-QVLSALCGNQGVAVDIP--RHIKFKGSVIPAT 238


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 163 VGGSTAIPWFRQLINTICT 219
           +GGSTAIP+ +QL+  + T
Sbjct: 117 LGGSTAIPYVKQLVKAVVT 135


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 206 TRFVHMFHYVLYIKYLRHTIECE 274
           T+FVH+FH  LY  Y   T  C+
Sbjct: 872 TQFVHIFHASLYTLYYVETTGCD 894


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 242 YRERNETYVQIVLISCRNQGIAVEPPTQRHLSDGHGTVPGTP 117
           Y ++ E Y  I L +C+  GI+  PP+  +LS     +  TP
Sbjct: 290 YVKKLEKYWSIYLSNCKKLGISTLPPS-NYLSPNRAELESTP 330


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -2

Query: 745 NLKIYSLGSARVLMSKCLR-KKTVCVEVNHFS-QI*LFHKLLILF-VYQK 605
           NL+I S+G+   L+ KCL         V+HFS  + L ++L  LF +Y K
Sbjct: 428 NLRIASMGNNHTLLEKCLLITNHATFLVSHFSWDVSLAYQLSRLFQLYYK 477


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +1

Query: 61  RTNAWKLSKRQHQLLLN-G*GVPGTVPWPSDRWRWVGGSTAIPW---FRQLINTICTYVS 228
           +T + K      Q+ +N G GVP   P P  +W  V     + W   + + IN    YV 
Sbjct: 348 KTGSLKRRVYPEQITINIGEGVPVPEPLPGHQWAEVKHDNTVTWLATWHENINNNVKYVF 407

Query: 229 L 231
           L
Sbjct: 408 L 408


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 745 NLKIYSLGSARVLMSKCLRKKTVCVEVNHFSQI*LFH 635
           N+KI   G A +LM    RK T+C   N+ +   LF+
Sbjct: 176 NVKIGDFGLAALLMDDEERKMTICGTPNYIAPEILFN 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,982,286
Number of Sequences: 5004
Number of extensions: 59472
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)