Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i24r
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                28   7.2  
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 17  KQPLRDCSSQ*TMAVEQTRGSYRSGNISYYSMVRGFPAQYRGRLTD 154
           KQ  RD  SQ T  +   RG     NI+ +S   G PA+ RGR++D
Sbjct: 498 KQITRDNQSQNTPVLPSKRGK----NINPHSRGTGRPARGRGRVSD 539


>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 227 ETYVQIVLISCRNQGIAVEPPTQRHLSDGHGTVPG 123
           E  +++  ++  ++ + V PPT +H S G G  PG
Sbjct: 106 ELSIELKNVTSSSRQVRVVPPTSKHFSIGLGRFPG 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,580,576
Number of Sequences: 59808
Number of extensions: 421550
Number of successful extensions: 872
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)