Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i24f
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    30   0.30 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.40 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    29   0.53 
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    29   0.70 
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    27   2.1  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   4.9  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   4.9  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   6.5  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   6.5  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    25   6.5  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   8.6  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   8.6  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 335 ASGGRLTAKLHASSARQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDSSTIAPVTEPTQE 514
           ASG + +     S+ +  H   Y  S+      +V   PAP T +P ++   PV +  ++
Sbjct: 135 ASGSKYSVHTSNSTPQSKHNAFYDASQTFGSTAKVAPAPAPSTKTPLANISKPVVQAQKD 194


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 354 VSRPPEAVSPKTLISAGTGLPPSRHSARCSTRSEHSTVSGEPSFTTT 214
           V   PE ++ ++L S    L  SRH+   S++S+  T   +P+F TT
Sbjct: 683 VQHSPEVLNDRSLAS----LSASRHADAISSKSKQHTEIAQPAFNTT 725


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = -1

Query: 351 SRPPEAVSP---KTLISAGTGLPPSRHSAR-CSTRSEHSTVSGEPSFTTTRISSAFWALV 184
           SRPP   S    K   S   G+P S ++ R  S+RS  ST+S EPS + T    A    +
Sbjct: 11  SRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYPMASRDSM 70

Query: 183 RTPQAKNR 160
           +    KN+
Sbjct: 71  KESYDKNK 78


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 384 STTPESTHAASNPCSAYGSWWSLRLRHHHPTRQRLLRSPSPPKNWSIMRP*STSLDARS 560
           S +P S H ++ P     S  + +  HHH +      SP+ P + +   P  ++ D+ S
Sbjct: 96  SQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSPTSSGPIGSNFDSAS 154


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 378 LGSTTPESTHAASNPCS--AYGSWWSL---RLRHHHPTRQRLLRSPSPP 509
           LG T+ + T A S+  +  A+GS WS    ++   + TR+R++ S S P
Sbjct: 413 LGLTSQQPTAAKSSGSNGDAFGSLWSSAVNKVHQENSTRERVVSSSSEP 461


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 443 VEPAPQTSSPDSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLA 580
           ++  P T S  +++I+P T  T +   ++  +Y+ G P ++  T A
Sbjct: 299 IDARPSTPSCPNASISPKTPNTGDHYGFDGAEYL-GTPLSVGSTTA 343


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 328 PQNSHISGHRPATKSPLGTVFDTQRAFHR 242
           PQ+ H+SG  P   SP+ T       + R
Sbjct: 899 PQSIHVSGRFPQVSSPVNTALSNSLLYIR 927


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 22/63 (34%), Positives = 24/63 (38%)
 Frame = -1

Query: 339 EAVSPKTLISAGTGLPPSRHSARCSTRSEHSTVSGEPSFTTTRISSAFWALVRTPQAKNR 160
           E+V PKT  S       S      S RSE S  S     T  + SS    L  TP   N 
Sbjct: 566 ESVQPKTTSSLSRSKTLSILEGSVSKRSEPSMDSILVQATPRKSSSVITELPDTPIKMNS 625

Query: 159 RDK 151
            DK
Sbjct: 626 LDK 628


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = +3

Query: 321 FWGKLLPVAD*QQNCTRLQLGSTTPESTHAASNPCSAYGSWWSLRLRHHHPTRQRLLRSP 500
           F G+L  V    Q+C  +   + TPE     S P     S  S R R H   R R  RSP
Sbjct: 527 FTGRLTSVVM-CQSCNEI---TNTPEPIQDLSIPIHYPSSRVSRRHRFHRALRSRFSRSP 582


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 347 RLTAKLHASSARQHHAGVYTCSEQPVQRVR 436
           R+   L  SS  +H A +++C + P+ RVR
Sbjct: 153 RIHVTLSRSSCDRHQADIFSCFQDPI-RVR 181


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 340 GSSFPQNSHISGHRPATKSPLGTV 269
           G+SF  N ++SG    T SP+G V
Sbjct: 58  GTSFGANRNVSGEAVFTTSPVGYV 81


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 246 WNARCVSNTVPSGDLVAGLC 305
           W  +CVSN  PS     G+C
Sbjct: 485 WELQCVSNVAPSMYKEGGIC 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,999
Number of Sequences: 5004
Number of extensions: 49541
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)