Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i24f
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0233 - 16061182-16061714,16062765-16063578 32 0.41
08_02_1165 + 24830547-24831154,24832048-24832159,24832250-248324... 32 0.41
05_06_0206 + 26369089-26369143,26369627-26369733,26369814-263706... 31 0.72
01_07_0318 + 42703176-42703473,42703563-42704290 31 0.95
03_01_0521 + 3916876-3916987,3917062-3917438 30 1.3
03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267 29 2.2
11_06_0284 + 21909758-21913645 29 2.9
08_01_0203 + 1639993-1641141 29 2.9
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 2.9
03_05_0141 - 21210176-21212140 29 3.8
04_04_0575 - 26342697-26342885,26343030-26343165,26343279-263437... 28 5.1
11_03_0176 - 11260900-11261286,11261459-11261593,11262971-112631... 28 6.7
10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800 28 6.7
09_04_0416 - 17399059-17399777,17400560-17400704 28 6.7
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 28 6.7
09_02_0520 - 10160551-10160939,10160986-10161220 27 8.9
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 27 8.9
08_01_0524 - 4560471-4560572,4560864-4560971,4561413-4561556,456... 27 8.9
03_06_0212 + 32400982-32402055 27 8.9
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 27 8.9
01_05_0518 + 22895940-22896428 27 8.9
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 27 8.9
>10_08_0233 - 16061182-16061714,16062765-16063578
Length = 448
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 371 SSARQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDSSTIAPVTEPT 508
SS R+HH GV T + P+ P P + +P +S +A PT
Sbjct: 110 SSRRRHHLGVPTVNGAPLCSSSSSALPPPHSRTPPASPLAAARGPT 155
>08_02_1165 +
24830547-24831154,24832048-24832159,24832250-24832421,
24832486-24832700,24833922-24833996,24834367-24834390
Length = 401
Score = 31.9 bits (69), Expect = 0.41
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -1
Query: 357 AVSRP-PEAVSPKTLISAGTGLP----PSRHSARCSTRSEHSTVSGEPSFTTTRISSAFW 193
AV P P A S K SA TG+ P + C E + GEP+ T I W
Sbjct: 189 AVESPRPAAASKKE--SASTGVKRRGGPGGLNKVCGVSPELQAIVGEPTMARTEIVKQLW 246
Query: 192 ALVRTPQAKNRRDKGK 145
A +R ++ +K K
Sbjct: 247 AYIRRNNLQDPNNKRK 262
>05_06_0206 +
26369089-26369143,26369627-26369733,26369814-26370647,
26370781-26370939,26371070-26371410,26373894-26373991,
26374244-26374350,26374715-26375266,26375366-26375524,
26375631-26376005
Length = 928
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 323 LGETASGGRLTAK-LHASSARQHHAGVYTCSEQP 421
L + GG L K LH SS QHH YTC++ P
Sbjct: 283 LAGLSDGGLLPVKNLHLSSFYQHHTIQYTCAKLP 316
>01_07_0318 + 42703176-42703473,42703563-42704290
Length = 341
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -1
Query: 390 WCCRAEDACSFAVSRPPEAVSPKTLISAGTGLPP 289
WCC A S A S PP VSPK LPP
Sbjct: 15 WCCGAAVVASAAASSPP-LVSPKAKPGVRPKLPP 47
>03_01_0521 + 3916876-3916987,3917062-3917438
Length = 162
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -1
Query: 321 TLISAGTGLPPSRHSARCSTRSEHSTVSGEPSFTTTRISSAFWALVRTPQAKNRRDKGK 145
T ++ +G R RCS +E T+SG R+ +RTP A R + K
Sbjct: 70 TAVAFDSGRTKRRQKWRCSATAEAETLSGARGGAQIRVPRPHGRRIRTPAAGGVRQRRK 128
>03_01_0536 - 4020235-4021161,4022760-4022808,4023203-4023267
Length = 346
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 393 PESTHAASNPCSAYGSWWSLRLRHHHPTRQRLLRSPSP 506
P +T ++S+ CS+YG + S H R R +R+ P
Sbjct: 121 PHATTSSSSECSSYGGFSSSEAESSHHRRLRPIRTTVP 158
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 138 NCVCLYLFYF*PAEFLRVPKTLRRSEWW 221
NC+ LYL+Y + R L+R WW
Sbjct: 77 NCIDLYLYYSGNKDIYRAKGRLQRGLWW 104
>08_01_0203 + 1639993-1641141
Length = 382
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 340 RWPTDSKTARVFSSAAP 390
RWP D T+RVFS A P
Sbjct: 109 RWPMDGSTSRVFSQAFP 125
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = -1
Query: 588 SGTARVQFKLNGRPTMYFKAS*LTSSWVGSVTGAIVDESGDDV*GAGSTKTRTRCTGCS 412
SG+ R Q+K G P++ SS + + G I+DESG GAG T R T S
Sbjct: 97 SGSGRHQYKSGGSPSLRTSRF-HRSSRLAAYPG-IIDESGFTSDGAGEAYTYMRTTTAS 153
>03_05_0141 - 21210176-21212140
Length = 654
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 351 SRPPEAVSPKTLISAGTGLPPSRHSARCSTRS 256
SR P +P+ S T PPSRH S RS
Sbjct: 17 SRDPLHAAPRRSRSPSTSRPPSRHRRTASARS 48
>04_04_0575 -
26342697-26342885,26343030-26343165,26343279-26343795,
26344286-26344381,26344933-26345011,26345329-26345712
Length = 466
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 375 EDACSFAVSRPPEAVSPKTLISAGTGLPPSRHSARCSTRSEHSTVSGEPSFTTTRIS--S 202
E A + A R +P AG+ L PSR SAR H+ S + T S +
Sbjct: 6 ETATTTAPPRRQAEKAPPPPARAGSDLDPSRCSAREEAGGGHTLSSSRAATARTGASGGA 65
Query: 201 AFWALVRT 178
A W++V++
Sbjct: 66 ASWSVVKS 73
>11_03_0176 -
11260900-11261286,11261459-11261593,11262971-11263117,
11263754-11263926,11264661-11264748,11265587-11265804,
11266367-11266424,11267133-11267219
Length = 430
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 447 SLRLRHHHPTRQRLLRSPSPP 509
+L LR HP +RLLR P PP
Sbjct: 4 ALLLRRGHPFLRRLLRPPPPP 24
>10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800
Length = 332
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 393 PESTHAASNPCSAYGSWWSLRLRHHHP 473
P AA+ +YG W+LR+ HH P
Sbjct: 169 PAEDAAAAYGRQSYGDQWALRVSHHAP 195
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 348 RPPEAVSPKTLISAGTGLPPSRHSARCSTRSE-HSTVSG 235
RPP+ +P L A + PP SARC RS H + G
Sbjct: 221 RPPDLAAPPPLRPAPS--PPRHRSARCRRRSSCHPALYG 257
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 390 WCCRAEDACSFAVSRPPEAVSPKTLISAGTGLPPSRHSARCSTRS 256
W R DA A+ PP + +P +PPS HS+ S+RS
Sbjct: 23 WRPRPADAAPPAL--PPPSSAPSDQAPEPVTIPPSEHSSHHSSRS 65
>09_02_0520 - 10160551-10160939,10160986-10161220
Length = 207
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 345 PPEAVSPKTLISAGTGLPPSRHSARCSTRSEHSTV 241
PPE VS + ++S G +PP + S S RS+ S V
Sbjct: 51 PPETVSSEPIMSPGAAVPPEKVS---SPRSQVSFV 82
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 302 VPADMRVLGETASGGR---LTAKLHASSARQHHAGVYTCSEQPVQRVR 436
+P D V G++++ G L A S+ ++HAG+Y+ E+ Q+ R
Sbjct: 261 IPIDEHVHGQSSAIGESIELLASPMRSALGENHAGMYSTEEERRQKAR 308
>08_01_0524 -
4560471-4560572,4560864-4560971,4561413-4561556,
4561655-4561747,4561906-4561968,4562086-4562133,
4562677-4562835,4563251-4563589
Length = 351
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 447 SLRLRHHHPTRQRLLRSPSPP 509
+L HHH R +LR P+PP
Sbjct: 25 ALSQHHHHQQRHLVLRPPAPP 45
>03_06_0212 + 32400982-32402055
Length = 357
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 290 GGRPVPADMRVLGETASGGRLTAKLHASSARQHHAGVYTCSEQPVQRVRVLVEPAPQ 460
GG V A V G+T S ++ A+ + H+ VYT +RVR+ V A Q
Sbjct: 26 GGEMVEA---VWGQTGSTASRIYRVRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQ 79
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/67 (28%), Positives = 24/67 (35%)
Frame = +2
Query: 299 PVPADMRVLGETASGGRLTAKLHASSARQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDS 478
P P V GE + G TA+ Q H P Q + P+P + P
Sbjct: 118 PAPGSPAVNGEDGAAG--TAQGRRPGRPQLHLATGRLFRTPSQGSLAMSSPSPSPTPPSP 175
Query: 479 STIAPVT 499
T AP T
Sbjct: 176 LTPAPAT 182
>01_05_0518 + 22895940-22896428
Length = 162
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 401 RLRRGAAELKTRAVLLSVGHRKQFPPKLSYQRAQACHQVATRHGVRHAA 255
R RR A T ++G+R FPP Q ++ G+R AA
Sbjct: 11 RARRAARPSTTTIGAAAIGNRFDFPPPFFTQNLLVLPKIPKSSGLREAA 59
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 323 LGETASGGRLTAKLHASSARQHHAGVYTCSEQPVQRVRV 439
LG S L LH S H A ++C+E PV ++RV
Sbjct: 157 LGRVRSVSPLGITLHTCSIGPH-AEEFSCAEVPVMKIRV 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,589,282
Number of Sequences: 37544
Number of extensions: 400700
Number of successful extensions: 1495
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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