Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i24f
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 32 0.42
SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27) 31 0.74
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 31 0.74
SB_47306| Best HMM Match : I-set (HMM E-Value=0) 30 1.3
SB_45513| Best HMM Match : COXG (HMM E-Value=1.3) 30 1.7
SB_52866| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_33825| Best HMM Match : Bacteriocin_II (HMM E-Value=5.5) 29 3.0
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057) 29 3.0
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 3.0
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 29 3.0
SB_32302| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_29651| Best HMM Match : DUF651 (HMM E-Value=0.055) 29 3.9
SB_31858| Best HMM Match : I-set (HMM E-Value=3.7e-08) 28 5.2
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2) 28 5.2
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_49686| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_15977| Best HMM Match : Pkinase (HMM E-Value=2e-06) 27 9.1
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 36.7 bits (81), Expect = 0.015
Identities = 27/107 (25%), Positives = 48/107 (44%)
Frame = +2
Query: 185 TSAQNAEEIRVVVKEGSPLTVECSLRVEHRAEWRLGGRPVPADMRVLGETASGGRLTAKL 364
T + A EIR E P + LR+EHR W+ G PV + LG+ + ++
Sbjct: 40 TKVRPASEIRTYT-EFVPDLYQHFLRIEHRESWKSLGLPVYYSIGTLGKLQLDVAASVEV 98
Query: 365 HASSARQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDSSTIAPVTEP 505
+S + ++ + T S+ Q + VE + + +AP+ +P
Sbjct: 99 CVNSTQFFNSFIETMSQPFEQVAKQFVEYYYSVFDSNRNNLAPLYQP 145
>SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 212 RVVVKEGSPLTVECSLRVEHRAE--W-RLGGRPVPADMRVLG-ETASGGRLTAKLHASSA 379
+V + EGS LT+EC ++ + W R R +P++ VL E G + +L
Sbjct: 11 KVTLDEGSTLTLECKANIDDFLDIGWERKDQRTLPSNRTVLDVEDDDGYFIIKRLSIVDM 70
Query: 380 RQHHAGVYTC 409
AGVYTC
Sbjct: 71 LPSDAGVYTC 80
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 31.9 bits (69), Expect = 0.42
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 206 EIRVV-VKEGSPLTVECSLRVEHRA--EWRLGGRPVPADMRVLGETASGGRLTAKLHASS 376
E+R V V EG+ +++ C L E + EW G PV D RV + + GR + L +
Sbjct: 1937 ELRPVEVFEGNEVSLVCKLSAEAKPTFEWSRNGSPVRLDNRV--QASFDGRYST-LKFLN 1993
Query: 377 ARQHHAGVYTC 409
A+ G Y+C
Sbjct: 1994 AKIEDQGTYSC 2004
>SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)
Length = 770
Score = 31.1 bits (67), Expect = 0.74
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +2
Query: 230 GSPLTVECSLRVEHRA---EWRLGGRPVPADMRVLGETASGGRLTAKLHASSARQHHAGV 400
G + + C++ RA +W G+ V + + G A L +A AGV
Sbjct: 152 GQNVVLNCTVAAGRRASRMDWLKHGQGVTEGVTYCLDARGAGLTCAVLQIVNASAKDAGV 211
Query: 401 YTCSEQPVQRVRV-LVEPAP 457
Y C + R+ + L +P P
Sbjct: 212 YVCEARGPPRINIPLTQPGP 231
>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 590
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 462 HHHPTRQRLLRSPSPPKNWSIM 527
HHHPT Q LL S S P +WSI+
Sbjct: 487 HHHPTGQLLLTSSSSP-HWSII 507
>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
Length = 1260
Score = 30.3 bits (65), Expect = 1.3
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%)
Frame = +2
Query: 209 IRVVVKEGSPLTVECSLRVEHRAEWRLGGRPVPADMRVL----GETASGGRLTA-----K 361
++++ E + +T E + + E EW +P+P D R+ GE A+ A
Sbjct: 1067 MQIIEGEDAVMTCEVTGKPEPSVEWLKDDKPLPRDQRLTPMYNGEVATLKLQKAILEDEA 1126
Query: 362 LHASSARQHHAGVYTCSEQPVQR---VRVLVEPA------PQTSSPDSSTIAPVTEPTQE 514
L+ +A V + +E V V + EP P + PD T+APV E +
Sbjct: 1127 LYTCTASNSLGSVSSSAELQVDEKGVVPISPEPVSPVFEEPVKAEPDEGTVAPVIEGLND 1186
Query: 515 LV 520
+V
Sbjct: 1187 VV 1188
Score = 29.1 bits (62), Expect = 3.0
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Frame = +2
Query: 221 VKEGSPLTVECSL--RVEHRAEWRLGGRPVPADMRVLGETASGGRLTAKLHASSARQHHA 394
V EG + + C++ + E EW G+P+ D V + + A L SA
Sbjct: 439 VVEGEDVMLACAVSGKPEPTVEWLKEGKPLSRDSHVRPKYEAE---IATLTFKSATLEDE 495
Query: 395 GVYTCSEQPV-----QRVRVLVEPAPQTSSPDSSTIAPVTE 502
+YTC + V+ P+ S+P+S+T PV E
Sbjct: 496 ALYTCVATNALGSVSSSAELQVDEKPEISAPESTT--PVAE 534
>SB_45513| Best HMM Match : COXG (HMM E-Value=1.3)
Length = 296
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 332 TASGGRLTAKLHASSARQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDSSTIAPVTE 502
T+ G A HAS+ H + + + S PVQ + EPA + S S I+ +E
Sbjct: 186 TSDAGSPIALKHASALNSHASPLNSASFSPVQAQAIGDEPAVRRSGGSESDISSSSE 242
>SB_52866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1376
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/64 (23%), Positives = 26/64 (40%)
Frame = +2
Query: 218 VVKEGSPLTVECSLRVEHRAEWRLGGRPVPADMRVLGETASGGRLTAKLHASSARQHHAG 397
V+ G L ++C++ E W GG +P D ++ +LH ++ G
Sbjct: 231 VISAGKNLVIKCTISGEQFQGWYRGGSKIPTDSSQTKYVSNPTSGAYQLHLNNIVVADGG 290
Query: 398 VYTC 409
Y C
Sbjct: 291 EYIC 294
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 29.5 bits (63), Expect = 2.2
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Frame = +2
Query: 290 GGRPVPADMRVLGETASGGRLTAKL---HASSARQHHAGVYTCSEQPVQRVRVLVEPAPQ 460
G RP P +M ++S GRL++ + H A + Y ++ + +R L Q
Sbjct: 731 GARPRPYEMDTSSSSSSSGRLSSSVTSEHRPPAYRPSPPSYLAVQKSREGLRSLSAGPNQ 790
Query: 461 TS--SPDSSTIA---PVTEPTQELVNYEALKYIVGRPFNLNC 571
TS S SST + P +EP + ++ + + I +P + C
Sbjct: 791 TSWYSDTSSTRSDGHPRSEPDPKDLHAMSARIIADKPVCVRC 832
>SB_33825| Best HMM Match : Bacteriocin_II (HMM E-Value=5.5)
Length = 243
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/70 (34%), Positives = 35/70 (50%)
Frame = +3
Query: 324 WGKLLPVAD*QQNCTRLQLGSTTPESTHAASNPCSAYGSWWSLRLRHHHPTRQRLLRSPS 503
W KL+P A Q+NC +Q + P+ H A+ P A G S+ HHPT+ + + P
Sbjct: 74 WKKLVPNASLQKNC-NMQGFNVNPQPKHGATIP--ARGK--SI----HHPTQGKTIH-PV 123
Query: 504 PPKNWSIMRP 533
P S+ P
Sbjct: 124 PSLVVSLSTP 133
>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
Length = 643
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = +2
Query: 422 VQRVRVLVEPAPQTSSPDSSTIAP----VTEPTQELV 520
V V V V+PAP+ + P + I+P +T PT E+V
Sbjct: 21 VAHVNVTVKPAPRVNKPPRADISPKEQTITLPTNEVV 57
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -1
Query: 354 VSRPPEAVSPKTLISAGTGLPPSRHSARCSTRSEHSTVSGEPSFTTTRISSAF 196
+ PPEAVS + T PP ++ ST S P FT + F
Sbjct: 254 IDTPPEAVSSSSQPPTETPSPPQTNAEVSSTPETQQDSSSLPDFTVPLLEMGF 306
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +2
Query: 215 VVVKEGSPLTVECSLRVEHRAEWRLGGRPVPADMRVLGETASGGRLTAKLHASSARQHHA 394
V E + E S R +W + +PV D R++ T+S G + KL + A
Sbjct: 4466 VTEDESAEFRCEVSGSPAPRIQWFMNDQPVSRDSRII--TSSDGPV-HKLAITKATLQDT 4522
Query: 395 GVYTC 409
GVY C
Sbjct: 4523 GVYKC 4527
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 345 PPEAVSPKTLISAGTGLPPSRHSARCSTRSEHSTVSGEPSFTTT 214
PP P T A T PP+ S ST + +T SGE S T++
Sbjct: 188 PPTTTPPPTTTQATTTNPPTTTSTASST-TVRATTSGEVSSTSS 230
>SB_32302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 266 EHRAEWRLGGRPVPADMRVLGETASGGRLTAKLHASSARQHHAGV 400
E R++W VP D + G+TA T + AR+H GV
Sbjct: 166 ETRSDWDDAFNAVPVDFKEEGQTAGKTEDTTEYVVEMARKHWLGV 210
>SB_29651| Best HMM Match : DUF651 (HMM E-Value=0.055)
Length = 289
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 239 LTVECSLRVEHRAEWRLGGRPVPADMRVLGETASGGRLTAKLHASSA 379
++V+ +RV+ + R +PV D L E G + A LHA A
Sbjct: 184 ISVDAIIRVKAESYERFKAKPVKDDADKLAEVPEGEAVDAALHAEDA 230
>SB_31858| Best HMM Match : I-set (HMM E-Value=3.7e-08)
Length = 229
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 200 AEEIRVVVKEGSPLTVECSLRVEHRAEWRLGGR 298
+ +I +V EGS +T+EC + WR G+
Sbjct: 66 SSQIAQIVTEGSNVTLECDAGINKTVSWRKVGQ 98
>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
Length = 623
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 348 RPPEAVSPKTLISAGTGLPPSRHSARCSTRSEHSTVSG 235
+PP A+ PK L G + S+H++ +T + STV G
Sbjct: 433 QPPIAIQPKLLPKVG--VQQSQHASSLNTAKQPSTVQG 468
>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 426 SAYGSWWSLRLRHHHPTRQRLLRSPSPPKNWSIM 527
+A+ + L L+ H TR R+ SP PPK + M
Sbjct: 111 TAFNDVFELDLKDHKWTRLRISGSPPPPKECATM 144
>SB_49686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -2
Query: 356 LSVGHRKQFPPK---LSYQRAQACHQVAT 279
L+VGH +Q PPK SY+R+ +C + T
Sbjct: 4 LTVGHNRQDPPKPWGSSYKRSTSCGKQTT 32
>SB_15977| Best HMM Match : Pkinase (HMM E-Value=2e-06)
Length = 429
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 356 LSVGHRKQFPPKLSYQ 309
+S GHRKQ P KLS+Q
Sbjct: 47 ISAGHRKQRPGKLSFQ 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,307
Number of Sequences: 59808
Number of extensions: 417362
Number of successful extensions: 1666
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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