Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i24f
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.58 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.58 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +2

Query: 212 RVVVKEGSPLTVECSLRVE--HRAEWRLGGRPVPADMRVLGETASGGRLTAKLHASSARQ 385
           +V    G  L ++C +        +W    R +P D+R   +    G L      S  ++
Sbjct: 527 KVTAVAGETLRLKCPVAGYPIEEIKWERANRELPDDLRQ--KVLPDGTLVI---TSVQKK 581

Query: 386 HHAGVYTCSEQPVQ 427
             AGVYTCS +  Q
Sbjct: 582 GDAGVYTCSARNKQ 595


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +2

Query: 212 RVVVKEGSPLTVECSLRVE--HRAEWRLGGRPVPADMRVLGETASGGRLTAKLHASSARQ 385
           +V    G  L ++C +        +W    R +P D+R   +    G L      S  ++
Sbjct: 527 KVTAVAGETLRLKCPVAGYPIEEIKWERANRELPDDLRQ--KVLPDGTLVI---TSVQKK 581

Query: 386 HHAGVYTCSEQPVQ 427
             AGVYTCS +  Q
Sbjct: 582 GDAGVYTCSARNKQ 595


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 539 YIVGRPFNLNCTL 577
           YI G PFN NC++
Sbjct: 676 YIGGNPFNCNCSM 688


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 499 RAHPRTGQL*GLEVHRWTPVQFEL 570
           R  P +  L  LEV RW P++  L
Sbjct: 112 RTEPLSPHLLNLEVERWRPLRSRL 135


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 17/73 (23%), Positives = 27/73 (36%)
 Frame = +2

Query: 350 LTAKLHASSARQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDSSTIAPVTEPTQELVNYE 529
           L A   +S +R     V    E   + +  +V+    T       +AP+    +E  NY 
Sbjct: 152 LAAMQQSSHSRSQEKAVAAELEDEQRLLATVVQAHLDTCDFTRDKVAPILVRARETPNYT 211

Query: 530 ALKYIVGRPFNLN 568
           A    +  P N N
Sbjct: 212 ACPPTLACPLNPN 224


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +2

Query: 380 RQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDSSTIAPVTEPTQELVNYEALKYI 544
           ++++A +YT S      V   V P       D+S I   +     +VNY  + ++
Sbjct: 524 KRNNAKIYTSSVNSNLTVNQTVNPVAINIPGDTSIIVDSSTSGATIVNYSIMIFL 578


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +3

Query: 369 RLQLGSTTPESTHAASNPCSAYGSWWSL 452
           R+  G      T    NP S    W+SL
Sbjct: 409 RMSTGEMKEAITQWQGNPISPLNDWYSL 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,139
Number of Sequences: 438
Number of extensions: 3444
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)