Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i24f
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22360.1 68417.m03232 SWIB complex BAF60b domain-containing p...    29   2.4  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    28   4.2  
At4g26990.1 68417.m03883 expressed protein                             27   7.4  
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    27   9.8  
At4g10890.1 68417.m01772 expressed protein                             27   9.8  
At2g20840.1 68415.m02456 secretory carrier membrane protein (SCA...    27   9.8  
At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM...    27   9.8  
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00...    27   9.8  

>At4g22360.1 68417.m03232 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 385

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -1

Query: 330 SPKTLISAGTGLP--PSRHSARCSTRSEHSTVSGEPSFTTTRISSAFWALVRTPQAKNRR 157
           +PK    AGT     P   +  C    E   V GEP+   T I    WA +R    ++  
Sbjct: 179 APKESAPAGTKRKGGPGGLNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPS 238

Query: 156 DKGK 145
           +K K
Sbjct: 239 NKRK 242


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
           similarity to MRP-like ABC transporter gb|U92650 from A.
           thaliana and canalicular multi-drug resistance protein
           gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 592 IQWHGESAIQIERASNDVLQGLIIDQ 515
           + W G S IQ+ R+S+D+ + L++++
Sbjct: 195 LAWRGVSGIQVTRSSSDLQEPLLVEE 220


>At4g26990.1 68417.m03883 expressed protein
          Length = 474

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/73 (24%), Positives = 27/73 (36%)
 Frame = +2

Query: 302 VPADMRVLGETASGGRLTAKLHASSARQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDSS 481
           VP      G    G +    +   +  +     YT     VQ   +LV P+PQ     S 
Sbjct: 318 VPYGNVTAGHAVGGFQFPQHMIGPTVNRAQPQRYTAQYHSVQAAPMLVNPSPQVMVARSG 377

Query: 482 TIAPVTEPTQELV 520
            +  V   +Q+LV
Sbjct: 378 QLVYVQSVSQDLV 390


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 371 SSARQHHAGVYTCSEQPVQRVRVLVEPAPQTSSPDSSTIAPVTE 502
           SS ++  A   + S  P + V+   EPA   +S  S+   PVTE
Sbjct: 442 SSLKEERANTVSKSNTPTKAVKA--EPASAPASSSSAATGPVTE 483


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 360 NCTRLQLGSTTPESTHAASNPCSAYGSWWSLRLRHHHPTRQRLLRSPS 503
           + T +   +TTP+ T   S  CS     +S+R +  H    R+L+S S
Sbjct: 182 SATTVTAATTTPKQTKICSRVCSRC-YHYSMRQKLRHSLHTRILKSNS 228


>At2g20840.1 68415.m02456 secretory carrier membrane protein (SCAMP)
           family protein contains Pfam domain, PF04144: SCAMP
           family
          Length = 282

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 458 QTSSPDSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDS 595
           Q+ S D   I P   PT        L  +   P++   T+ +PLDS
Sbjct: 5   QSHSFDDGEINPFANPTSVPAATSKLSPLPPEPYDRGATMDIPLDS 50


>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
            identical to SP|Q42510; contains Pfam profile PF01369:
            Sec7 domain
          Length = 1451

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 300  GLPPSRHSARCSTRSEHSTVSGEPSFTTTRISSAFWALVRTPQ 172
            GL P+R ++  +  SEHS+  G+       +SSA    + TP+
Sbjct: 905  GLLPARVASDAADESEHSSEQGQGKPLANSLSSAHLQSMGTPR 947


>At1g01110.1 68414.m00014 expressed protein contains Prosite
           PS00165: Serine/threonine dehydratases
           pyridoxal-phosphate attachment site
          Length = 364

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 372 LQLGSTTPESTHAASNPCSAYGSWWSLRLRHHHPTRQRLLRSPSPPKNWSIM 527
           +++ ++ P S   A +P          R  HH+ +R     +PSP K+  I+
Sbjct: 155 VEIDTSQPYSRTGAGSPSRGQRPSSPSRTSHHYQSRNNFSATPSPAKSRPIL 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,227
Number of Sequences: 28952
Number of extensions: 281345
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)