Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10i22f
(592 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124; Eukar... 215 9e-55
UniRef50_O65729 Cluster: 60S ribosomal protein L18; n=17; Eukary... 183 2e-45
UniRef50_P07279 Cluster: 60S ribosomal protein L18; n=5; Dikarya... 158 8e-38
UniRef50_Q7RPR6 Cluster: Eukaryotic ribosomal protein L18, putat... 149 5e-35
UniRef50_Q4N438 Cluster: 60S ribosomal protein L18; n=8; Eukaryo... 139 5e-32
UniRef50_Q4QG98 Cluster: 60S ribosomal protein L18; n=8; Trypano... 138 7e-32
UniRef50_A0BXY7 Cluster: Chromosome undetermined scaffold_135, w... 138 1e-31
UniRef50_UPI0000E4A07F Cluster: PREDICTED: similar to ribosomal ... 137 2e-31
UniRef50_Q7QQK8 Cluster: Ribosomal protein L18; n=1; Giardia lam... 130 3e-29
UniRef50_UPI0000498BAB Cluster: 60S ribosomal protein L18; n=1; ... 127 2e-28
UniRef50_A4D0W6 Cluster: Similar to ribosomal protein L18; 60S r... 127 2e-28
UniRef50_A0ED68 Cluster: Chromosome undetermined scaffold_9, who... 126 4e-28
UniRef50_UPI0000F2DC1A Cluster: PREDICTED: similar to ribosomal ... 98 1e-19
UniRef50_UPI000050E205 Cluster: 60S ribosomal subunit protein L1... 92 1e-17
UniRef50_UPI000155D3ED Cluster: PREDICTED: similar to ribosomal ... 75 1e-12
UniRef50_A7Q837 Cluster: Chromosome undetermined scaffold_62, wh... 72 9e-12
UniRef50_A5BN99 Cluster: Putative uncharacterized protein; n=1; ... 72 9e-12
UniRef50_Q8SS76 Cluster: 60S RIBOSOMAL PROTEIN L18; n=1; Encepha... 64 2e-09
UniRef50_Q98RU3 Cluster: 60s ribosomal protein L18; n=1; Guillar... 53 4e-06
UniRef50_Q6CXL9 Cluster: Similarity; n=1; Kluyveromyces lactis|R... 47 3e-04
UniRef50_Q8ZYQ2 Cluster: 50S ribosomal protein L18e; n=7; Thermo... 43 0.006
UniRef50_A0RXP6 Cluster: Ribosomal protein L18E; n=2; Thermoprot... 39 0.076
UniRef50_Q5ANC1 Cluster: Putative uncharacterized protein; n=1; ... 39 0.10
UniRef50_A6UW02 Cluster: 50S ribosomal protein L15; n=1; Methano... 38 0.23
UniRef50_Q6ZRL6 Cluster: CDNA FLJ46261 fis, clone TESTI4025062; ... 36 0.94
UniRef50_UPI0000DA3F07 Cluster: PREDICTED: similar to 60S riboso... 35 1.2
UniRef50_Q8TVB7 Cluster: 50S ribosomal protein L18e; n=12; Archa... 34 2.2
UniRef50_Q2Q0G4 Cluster: Ribosomal protein L18E; n=1; uncultured... 34 2.9
UniRef50_UPI0000E4A0C9 Cluster: PREDICTED: similar to tethering ... 33 3.8
UniRef50_A5UN56 Cluster: 50S ribosomal protein L15; n=2; Methano... 33 3.8
UniRef50_UPI0000D56F37 Cluster: PREDICTED: similar to CG4917-PA,... 33 5.0
UniRef50_Q8PW46 Cluster: 50S ribosomal protein L18e; n=16; Eurya... 33 5.0
UniRef50_UPI000023CCCF Cluster: hypothetical protein FG07400.1; ... 33 6.6
UniRef50_Q4RHJ6 Cluster: Chromosome 19 SCAF15045, whole genome s... 33 6.6
UniRef50_Q06035 Cluster: Gag,protease,endonuclease, reverse tran... 33 6.6
UniRef50_Q0SUG4 Cluster: CRISPR-associated protein Csx8, putativ... 32 8.7
UniRef50_Q4UCQ7 Cluster: Putative uncharacterized protein; n=2; ... 32 8.7
UniRef50_Q22W77 Cluster: EGF-like domain containing protein; n=1... 32 8.7
UniRef50_A1DA31 Cluster: Putative uncharacterized protein; n=1; ... 32 8.7
>UniRef50_Q07020 Cluster: 60S ribosomal protein L18; n=124;
Eukaryota|Rep: 60S ribosomal protein L18 - Homo sapiens
(Human)
Length = 188
Score = 215 bits (524), Expect = 9e-55
Identities = 104/171 (60%), Positives = 123/171 (71%)
Frame = +3
Query: 78 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 257
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 258 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 437
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 438 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590
LTFDQLAL +P G TVL+ G R RE RHFG APG P SHTKPYVR+KG
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKG 171
>UniRef50_O65729 Cluster: 60S ribosomal protein L18; n=17;
Eukaryota|Rep: 60S ribosomal protein L18 - Cicer
arietinum (Chickpea) (Garbanzo)
Length = 183
Score = 183 bits (446), Expect = 2e-45
Identities = 90/162 (55%), Positives = 116/162 (71%)
Frame = +3
Query: 105 DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 284
++K +RT KS DI T++ FN ++L+RLFMS++NRPP+S+SRL ++
Sbjct: 8 NKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKY 67
Query: 285 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 464
M+ +EG I VVVG VT+D+R+Y +P + V AL TE ARARI AGGE LTFDQLALR
Sbjct: 68 MQG--KEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALR 125
Query: 465 APTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590
P TVL++G +NAREAV+HFGPAPG P SHTKPYVR+KG
Sbjct: 126 LPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKG 166
>UniRef50_P07279 Cluster: 60S ribosomal protein L18; n=5;
Dikarya|Rep: 60S ribosomal protein L18 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 186
Score = 158 bits (384), Expect = 8e-38
Identities = 85/177 (48%), Positives = 114/177 (64%), Gaps = 6/177 (3%)
Frame = +3
Query: 78 MGIDINHK-HDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 254
MGID K H R RT KS ++ T+A FN++VL+ LF+S+INRP
Sbjct: 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60
Query: 255 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 434
P+SVSR+AR +K+ VVVGTVT+D R+++ PK TVAAL T ARA+I+ AGGE
Sbjct: 61 PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120
Query: 435 ILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAP---GAPR--SHTKPYVRTKG 590
+T DQLA+RAP G+ T++++G RN+REAVRHFG P APR S + + R +G
Sbjct: 121 CITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMGPHKGKAPRILSTGRKFERARG 177
>UniRef50_Q7RPR6 Cluster: Eukaryotic ribosomal protein L18,
putative; n=4; Plasmodium (Vinckeia)|Rep: Eukaryotic
ribosomal protein L18, putative - Plasmodium yoelii
yoelii
Length = 243
Score = 149 bits (361), Expect = 5e-35
Identities = 78/176 (44%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Frame = +3
Query: 66 LVVKMGIDI-NHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSR 242
+++ MGID+ N +K R + S++ T+ FN+I+ +RL M +
Sbjct: 53 ILINMGIDLKNVGRIKKHGRKNLVSKNPYLRLLVKLYRFLARRTDVNFNKIIAKRLIMPK 112
Query: 243 INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILA 422
RPP+S+S+L +HM + +AVVVG++T+D RL+ M V AL TE AR RI+
Sbjct: 113 RFRPPLSLSKLQQHMSN--NQNSVAVVVGSITDDKRLFSCRNMKVCALRFTETARKRIVD 170
Query: 423 AGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590
AGGE LTFDQLALR PTGK +L++G AR A +HFG APG P+S +PYVR+KG
Sbjct: 171 AGGECLTFDQLALRYPTGKDCILLRGPTKARTAEKHFGSAPGRPKSKARPYVRSKG 226
>UniRef50_Q4N438 Cluster: 60S ribosomal protein L18; n=8;
Eukaryota|Rep: 60S ribosomal protein L18 - Theileria
parva
Length = 184
Score = 139 bits (336), Expect = 5e-32
Identities = 71/133 (53%), Positives = 96/133 (72%)
Frame = +3
Query: 192 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 371
T+ FN++VL+RL M R + P+S+S+L++HM+K R AVVVGTVTND R+ +PK+
Sbjct: 40 TDHSFNKVVLKRLLMPRRFKAPLSLSKLSKHMEK--RPDNTAVVVGTVTNDERMDVVPKL 97
Query: 372 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGA 551
+V AL VTE AR RILA+GGE+LTFDQL R+PTG + L++G AREAV+HF
Sbjct: 98 SVCALRVTETARKRILASGGEVLTFDQLVARSPTGSRCTLLRGATKAREAVKHF---RNE 154
Query: 552 PRSHTKPYVRTKG 590
+ + KPYVR+KG
Sbjct: 155 VKGNPKPYVRSKG 167
>UniRef50_Q4QG98 Cluster: 60S ribosomal protein L18; n=8;
Trypanosomatidae|Rep: 60S ribosomal protein L18 -
Leishmania major
Length = 198
Score = 138 bits (335), Expect = 7e-32
Identities = 73/139 (52%), Positives = 98/139 (70%), Gaps = 6/139 (4%)
Frame = +3
Query: 192 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKP------TREGLIAVVVGTVTNDVRL 353
T++ FN++V +RL SR NR PIS+SR+A MK+ ++ IAVVVG V +DVR+
Sbjct: 40 TSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKSKAAPIAVVVGDVLDDVRM 99
Query: 354 YKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 533
+IP M V AL ++ AR I+AAGGE LTFDQLA+ APTGK T L++G+++ RE+VRHF
Sbjct: 100 ARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPTGKNTYLLRGRKSGRESVRHF 159
Query: 534 GPAPGAPRSHTKPYVRTKG 590
G A G P SH+KPY +G
Sbjct: 160 G-ASGVPGSHSKPYATNRG 177
>UniRef50_A0BXY7 Cluster: Chromosome undetermined scaffold_135,
whole genome shotgun sequence; n=3; Eukaryota|Rep:
Chromosome undetermined scaffold_135, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 393
Score = 138 bits (333), Expect = 1e-31
Identities = 80/173 (46%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Frame = +3
Query: 66 LVVKMGIDINHKH--DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMS 239
L ++ G+D K R V R +V S ++ T+++FN VLRRL +
Sbjct: 212 LSIQQGVDAYKKTRVQRNVGR-KVTSTNLYLKLLIKLYKFLARRTDSQFNATVLRRLQST 270
Query: 240 RINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARIL 419
R R PISVSRL + + + VVVGTVT+D RL +PK+ V AL TE AR RIL
Sbjct: 271 RTARYPISVSRLVKQINTAKDKTRTLVVVGTVTDDARLLTVPKLNVCALRFTETARKRIL 330
Query: 420 AAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYV 578
AAGG+ LTFDQLA + PTG T+L++G + REA++HFG A G P SH KPYV
Sbjct: 331 AAGGKTLTFDQLAQQNPTGTGTILLRGPK-VREALKHFGRAAGLPGSHAKPYV 382
>UniRef50_UPI0000E4A07F Cluster: PREDICTED: similar to ribosomal
protein L18, partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ribosomal protein
L18, partial - Strongylocentrotus purpuratus
Length = 354
Score = 137 bits (332), Expect = 2e-31
Identities = 65/112 (58%), Positives = 88/112 (78%)
Frame = +3
Query: 192 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 371
TNAKFN IVL+RLFMSR N+ +S++R+ R M K REG AVVVG +T+DVR++K+PK+
Sbjct: 9 TNAKFNNIVLKRLFMSRSNKAAMSLARVVRFMNKDGREGKTAVVVGCITDDVRIHKLPKL 68
Query: 372 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVR 527
+ AL VT +ARARI+ AGGEI+TFDQLAL++P G+ TVL+QG ++ + R
Sbjct: 69 KICALRVTARARARIIKAGGEIITFDQLALQSPKGQNTVLMQGFKSETDMER 120
>UniRef50_Q7QQK8 Cluster: Ribosomal protein L18; n=1; Giardia
lamblia ATCC 50803|Rep: Ribosomal protein L18 - Giardia
lamblia ATCC 50803
Length = 179
Score = 130 bits (313), Expect = 3e-29
Identities = 76/172 (44%), Positives = 97/172 (56%), Gaps = 1/172 (0%)
Frame = +3
Query: 78 MGIDINHK-HDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 254
MGID+ RKV R E KS + T F +++ +RL +S+ NRP
Sbjct: 1 MGIDLKTGIKKRKVERKEPKSPNPYIRLLHNAFKVVYENTGEDFTKVLTKRLCLSKTNRP 60
Query: 255 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 434
+SVSRLA M K RE IAVV TVTND RL IP+MT+ AL + AR+RI AGG
Sbjct: 61 VLSVSRLAHLMHK--REDKIAVVASTVTNDERLVTIPRMTICALKFSATARSRIEKAGGR 118
Query: 435 ILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590
++FD+L PTG VL+QG+R+ R + FG +PG P SH KP KG
Sbjct: 119 CMSFDELLAEKPTGDNCVLLQGRRSCRAVCKKFG-SPGRPNSHVKPKGEHKG 169
>UniRef50_UPI0000498BAB Cluster: 60S ribosomal protein L18; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L18 - Entamoeba histolytica HM-1:IMSS
Length = 168
Score = 127 bits (306), Expect = 2e-28
Identities = 70/153 (45%), Positives = 92/153 (60%)
Frame = +3
Query: 78 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 257
M ID++ H RK + + T +KF + +L RL +SR+NRP
Sbjct: 1 MAIDLDRHHVRKHVSKTARGNNAYMKLLVRLYGFLARRTQSKFAKTILHRLCLSRVNRPI 60
Query: 258 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 437
+S S+LA MKK E AV V TVT D R Y +PKM V AL T+ A A I AGG+
Sbjct: 61 VSTSKLACLMKKHPEE--TAVCVNTVTYDSR-YPVPKMNVCALKFTKTAEAAITKAGGKC 117
Query: 438 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 536
L FD+LAL+APTG+KTVL++G+RN REA++HFG
Sbjct: 118 LRFDELALKAPTGRKTVLIRGKRNVREALKHFG 150
>UniRef50_A4D0W6 Cluster: Similar to ribosomal protein L18; 60S
ribosomal protein L18; n=2; Homo sapiens|Rep: Similar to
ribosomal protein L18; 60S ribosomal protein L18 - Homo
sapiens (Human)
Length = 224
Score = 127 bits (306), Expect = 2e-28
Identities = 62/115 (53%), Positives = 80/115 (69%)
Frame = +3
Query: 246 NRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAA 425
N+PP+S+SR+ MK P +E AVVVGT+T+DV + ++PK+ V AL VT +AR+ I+
Sbjct: 93 NQPPLSLSRMIPKMKLPGQENKTAVVVGTITDDVWVQEVPKLKVCALGVTSRARSHIVRV 152
Query: 426 GGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590
GG+ LTFDQLAL +P TVL+ G R RE HF A G P SHTKPYVR+KG
Sbjct: 153 GGKNLTFDQLALDSPKVCSTVLLSGPRKGREVYWHFDKALGTPHSHTKPYVRSKG 207
>UniRef50_A0ED68 Cluster: Chromosome undetermined scaffold_9, whole
genome shotgun sequence; n=6; Eukaryota|Rep: Chromosome
undetermined scaffold_9, whole genome shotgun sequence -
Paramecium tetraurelia
Length = 469
Score = 126 bits (304), Expect = 4e-28
Identities = 70/129 (54%), Positives = 86/129 (66%)
Frame = +3
Query: 192 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 371
T++ FN VLRRL +R R PISVSRL + + + VVVGTVT+DVRL +PK+
Sbjct: 335 TDSNFNATVLRRLQQTRTARYPISVSRLVKQINTAKDKTRTLVVVGTVTDDVRLLTVPKI 394
Query: 372 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGA 551
V TE AR RILAAGG+ LTFDQLA + PTG T+L++G R RE ++HFG A G
Sbjct: 395 KV----FTETARKRILAAGGKTLTFDQLAQQNPTGTGTILLRGPR-VREELKHFGRAAGL 449
Query: 552 PRSHTKPYV 578
P SH KPYV
Sbjct: 450 PGSHAKPYV 458
>UniRef50_UPI0000F2DC1A Cluster: PREDICTED: similar to ribosomal
protein L18; n=1; Monodelphis domestica|Rep: PREDICTED:
similar to ribosomal protein L18 - Monodelphis domestica
Length = 184
Score = 98.3 bits (234), Expect = 1e-19
Identities = 49/113 (43%), Positives = 71/113 (62%)
Frame = +3
Query: 252 PPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGG 431
PP+ +SR+ R MK E A V+GTVT+++R+ +PK+ V+AL VT AR+RIL A G
Sbjct: 47 PPLPLSRMIRKMKLEGTENKTAAVMGTVTDNIRIQDVPKLKVSALRVTSNARSRILKANG 106
Query: 432 EILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590
+IL+FDQLA+ +P +G + + RH G G+P S+ KPYV + G
Sbjct: 107 KILSFDQLAMTSP--------KGPQKCYQGYRHLGKVSGSPHSYAKPYVGSTG 151
>UniRef50_UPI000050E205 Cluster: 60S ribosomal subunit protein L18;
n=1; Theileria annulata strain Ankara|Rep: 60S ribosomal
subunit protein L18 - Theileria annulata strain Ankara
Length = 222
Score = 91.9 bits (218), Expect = 1e-17
Identities = 45/84 (53%), Positives = 60/84 (71%)
Frame = +3
Query: 339 NDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNARE 518
+D R+ +PK++V AL VTE AR RILA+GGE+LTFDQL R+P G K L++G+ ARE
Sbjct: 125 DDERMDVVPKLSVCALRVTETARKRILASGGEVLTFDQLVARSPIGGKCTLLRGETKARE 184
Query: 519 AVRHFGPAPGAPRSHTKPYVRTKG 590
AV+HF + + KPYVR+KG
Sbjct: 185 AVKHF---RNEVKGNPKPYVRSKG 205
Score = 56.4 bits (130), Expect = 5e-07
Identities = 31/68 (45%), Positives = 45/68 (66%)
Frame = +3
Query: 192 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 371
T+ FN+IVL+RL M R + P+S+S+L++HM+ +R AVV+GTVT+ L IP
Sbjct: 40 TDFPFNKIVLKRLLMPRRYKAPLSLSKLSKHME--SRPNNTAVVIGTVTSTESLGMIPST 97
Query: 372 TVAALHVT 395
TV + VT
Sbjct: 98 TVTLVLVT 105
>UniRef50_UPI000155D3ED Cluster: PREDICTED: similar to ribosomal
protein L18; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to ribosomal protein L18 -
Ornithorhynchus anatinus
Length = 188
Score = 74.9 bits (176), Expect = 1e-12
Identities = 34/66 (51%), Positives = 44/66 (66%)
Frame = +3
Query: 78 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 257
+G+DI H DRKVRR E KSQDI TN+ FN++VL+RLFMSR NRPP
Sbjct: 110 LGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNKVVLKRLFMSRTNRPP 169
Query: 258 ISVSRL 275
+++SR+
Sbjct: 170 LALSRM 175
>UniRef50_A7Q837 Cluster: Chromosome undetermined scaffold_62, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_62, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 421
Score = 72.1 bits (169), Expect = 9e-12
Identities = 39/113 (34%), Positives = 65/113 (57%)
Frame = +3
Query: 78 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 257
+G+ ++ K +K + T KS DI T +KFN + L+R FMS++N+ P
Sbjct: 3 IGLVVDDK-SKKTKCTAPKSDDIYLKLTVKLYHFLVRKTGSKFNVVTLKRFFMSKVNKLP 61
Query: 258 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 416
+ +SRL R M ++G I VV+G+VT+D+R+Y++ + V L T++ R I
Sbjct: 62 LLLSRLVRFM--DGKKGKIVVVIGSVTDDLRVYEVLYLKVTILRFTKRVREGI 112
>UniRef50_A5BN99 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 271
Score = 72.1 bits (169), Expect = 9e-12
Identities = 39/113 (34%), Positives = 65/113 (57%)
Frame = +3
Query: 78 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 257
+G+ ++ K +K + T KS DI T +KFN + L+R FMS++N+ P
Sbjct: 3 IGLVVDDK-SKKTKCTAPKSDDIYLKLTVKLYHFLVRKTGSKFNVVTLKRFFMSKVNKLP 61
Query: 258 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 416
+ +SRL R M ++G I VV+G+VT+D+R+Y++ + V L T++ R I
Sbjct: 62 LLLSRLVRFM--DGKKGKIVVVIGSVTDDLRVYEVLYLKVTILRFTKRVREGI 112
>UniRef50_Q8SS76 Cluster: 60S RIBOSOMAL PROTEIN L18; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L18
- Encephalitozoon cuniculi
Length = 200
Score = 64.5 bits (150), Expect = 2e-09
Identities = 43/156 (27%), Positives = 73/156 (46%)
Frame = +3
Query: 120 RTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPT 299
R E +S++I ++ + + +RL MS+ +R P+ +S++ + +
Sbjct: 20 RKEPRSKNIYLRALSDFYTKVASNSSVLAIKKISKRLKMSKSDRQPVKISKIVSEIGESK 79
Query: 300 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 479
+ +AVVV V +D + IP + V AL ++ + +I GG I T DQL P
Sbjct: 80 DK--VAVVVAKVLDDDEVMVIPAVKVVALQWSKGVKEKIERYGGTIGTLDQLFELCPNMD 137
Query: 480 KTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTK 587
LV + +R + + +GPAPG S T P K
Sbjct: 138 DICLVSTNKFSRRSAKFWGPAPGEKGSTTYPRANQK 173
>UniRef50_Q98RU3 Cluster: 60s ribosomal protein L18; n=1; Guillardia
theta|Rep: 60s ribosomal protein L18 - Guillardia theta
(Cryptomonas phi)
Length = 167
Score = 53.2 bits (122), Expect = 4e-06
Identities = 28/102 (27%), Positives = 57/102 (55%)
Frame = +3
Query: 201 KFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVA 380
KF + ++RR SR +R IS+S+L + K T + ++ V + ND R+ K PK+ +
Sbjct: 67 KFLKELIRRTNSSRKSRSVISLSKLIKFSLKDTTKSILTV--SKILNDERISKTPKLKIF 124
Query: 381 ALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 506
AL+ + + +I+ GG+I +++ + K + ++G++
Sbjct: 125 ALNFSSSVKKKIIENGGQIFKLNEIKVDDFLNMKILFIRGKK 166
>UniRef50_Q6CXL9 Cluster: Similarity; n=1; Kluyveromyces lactis|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 186
Score = 47.2 bits (107), Expect = 3e-04
Identities = 31/119 (26%), Positives = 59/119 (49%)
Frame = -3
Query: 542 SRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLR 363
+ +V+ + S T +L S+ SQLI+S F++S Q+ +SS+ L
Sbjct: 52 TETEVSSSFSGSSWTSDDQGVLTLWSSNSQLIQSDGFTTSLQDLSLGTSSESQSSNGGLW 111
Query: 362 YLVQSHVICDCPHYHGNQTLTSWLLHVARQTRHRDWWPVDTAHKEPA*NDLIEFGICTS 186
S VI + + +++LL +R + +R+WW VD ++ ++L+E+ I T+
Sbjct: 112 EFKDSVVIGNSTNNDNGLLSSTFLLQGSRDSGNRNWWSVDLGQEQRLQDNLVEWSISTT 170
>UniRef50_Q8ZYQ2 Cluster: 50S ribosomal protein L18e; n=7;
Thermoprotei|Rep: 50S ribosomal protein L18e -
Pyrobaculum aerophilum
Length = 122
Score = 42.7 bits (96), Expect = 0.006
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +3
Query: 285 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 464
+ + +EG + VV G + +L K K+ VAA+ ++ KA +++ AGGE+LT +L +
Sbjct: 54 LNRVAKEGDVVVVPGKLLAGGQLNK--KIIVAAVKISPKAARKVIEAGGEVLTIPELVRK 111
Query: 465 APTGKKTVLV 494
P G +V
Sbjct: 112 YPRGSGVRIV 121
>UniRef50_A0RXP6 Cluster: Ribosomal protein L18E; n=2;
Thermoprotei|Rep: Ribosomal protein L18E - Cenarchaeum
symbiosum
Length = 126
Score = 39.1 bits (87), Expect = 0.076
Identities = 24/82 (29%), Positives = 45/82 (54%)
Frame = +3
Query: 249 RPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAG 428
R ++++++AR+ T+EG + VV G V + K+T+ ++ A ++L++G
Sbjct: 50 RRTLNLNKIARY----TKEGDVVVVPGRVLGTGSMPH--KITLCPFGISGAAAEKVLSSG 103
Query: 429 GEILTFDQLALRAPTGKKTVLV 494
G + F +L PTGK VL+
Sbjct: 104 GRVTGFAELTKEFPTGKGVVLL 125
>UniRef50_Q5ANC1 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 123
Score = 38.7 bits (86), Expect = 0.10
Identities = 26/64 (40%), Positives = 34/64 (53%)
Frame = -1
Query: 433 SPPAAKMRARAFSVT*RAATVIFGILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDTEIG 254
SPP K+ + A +V +AA V FG + S VTVPTTT + + F +TE G
Sbjct: 3 SPPFFKISSLAPAVNLKAAIVAFGNSNNSLSSVTVPTTTMVFSAAPFCFKALEILETETG 62
Query: 253 GRLI 242
G LI
Sbjct: 63 GSLI 66
>UniRef50_A6UW02 Cluster: 50S ribosomal protein L15; n=1;
Methanococcus aeolicus Nankai-3|Rep: 50S ribosomal
protein L15 - Methanococcus aeolicus Nankai-3
Length = 120
Score = 37.5 bits (83), Expect = 0.23
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +3
Query: 207 NQIVLRRLFMSRINRPPISVSRL-ARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAA 383
N + + + R+++P +S + + + T E + VV G V +L K+TVAA
Sbjct: 25 NDVKIWKDLAKRLSKPSRIISEVNVSRLNRYTEENHVVVVPGKVLGSGKLAH--KITVAA 82
Query: 384 LHVTEKARARILAAGGEILTFDQLALRAPTG 476
+E A+ + AGG +T +L P G
Sbjct: 83 FSFSEGAKKAVEEAGGRCITIKELINENPKG 113
>UniRef50_Q6ZRL6 Cluster: CDNA FLJ46261 fis, clone TESTI4025062;
n=2; Homo sapiens|Rep: CDNA FLJ46261 fis, clone
TESTI4025062 - Homo sapiens (Human)
Length = 280
Score = 35.5 bits (78), Expect = 0.94
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Frame = +2
Query: 314 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF-----*SAGSSCSDWQ 478
CR SG S R CS +S T CW + F S+G+S +
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSFTSCSCWSSGTSSTPCS 89
Query: 479 EDSTGTRSAKC----S*GSASLWPCSRSTALSH*TLCSHQGT 592
S+GT S C S S++ W C S S +C GT
Sbjct: 90 CRSSGTSSTSCSCWSSGTSSTSWSCKSSGTSSTCYMCLSSGT 131
>UniRef50_UPI0000DA3F07 Cluster: PREDICTED: similar to 60S ribosomal
protein L18; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L18 - Rattus norvegicus
Length = 112
Score = 35.1 bits (77), Expect = 1.2
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 273 LARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAAL 386
+ + MK P E AVVVG VT+DVR+ ++ ++ V AL
Sbjct: 1 MIQKMKLPGWENKTAVVVGMVTDDVRILEVHRLKVCAL 38
>UniRef50_Q8TVB7 Cluster: 50S ribosomal protein L18e; n=12;
Archaea|Rep: 50S ribosomal protein L18e - Methanopyrus
kandleri
Length = 127
Score = 34.3 bits (75), Expect = 2.2
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +3
Query: 195 NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPT-REGLIAVVVGTVTNDVRLYKIPKM 371
NA + V RL R R ++V +L ++ +E +V G V D + + +
Sbjct: 28 NAPVWRDVAERLSRPRRQRAEVNVGKLDGLARRGVIQEEETVLVPGKVLGDGVITQ--PL 85
Query: 372 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQ 497
VAA + AR +I AAGGE LT +L P G +++
Sbjct: 86 RVAAWRFSRTARMKIEAAGGECLTIRELLEENPEGSYIRIIE 127
>UniRef50_Q2Q0G4 Cluster: Ribosomal protein L18E; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L18E -
uncultured organism HF70_19B12
Length = 121
Score = 33.9 bits (74), Expect = 2.9
Identities = 32/96 (33%), Positives = 45/96 (46%)
Frame = +3
Query: 192 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 371
T A + V RL SR N ++SRL+R E +V G + + P
Sbjct: 26 TGAALWRDVALRLETSRSNWAEPNLSRLSR----TAGEDETILVPGKLLGSGDVIGSP-- 79
Query: 372 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 479
+VAA V+ AR++I AAGG ++T L P GK
Sbjct: 80 SVAAYSVSAGARSKIEAAGGRVMTIRDLMNDNPNGK 115
>UniRef50_UPI0000E4A0C9 Cluster: PREDICTED: similar to tethering
factor SEC34; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to tethering factor SEC34 -
Strongylocentrotus purpuratus
Length = 781
Score = 33.5 bits (73), Expect = 3.8
Identities = 17/63 (26%), Positives = 37/63 (58%)
Frame = -3
Query: 539 RAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 360
+A+ CL+ +LTL + + + +Q + K+ +S+S+NA T F+G +S+ ++
Sbjct: 198 QARFKQCLSK-ALTLIKAAVFTILNGATQQVVPKDVTSTSENAFTLFYGKFRSNAPKIKA 256
Query: 359 LVQ 351
L++
Sbjct: 257 LME 259
>UniRef50_A5UN56 Cluster: 50S ribosomal protein L15; n=2;
Methanobacteriaceae|Rep: 50S ribosomal protein L15 -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 121
Score = 33.5 bits (73), Expect = 3.8
Identities = 27/101 (26%), Positives = 49/101 (48%)
Frame = +3
Query: 195 NAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMT 374
NA + V RL S +++S +AR+ +V G V ++ L + K+
Sbjct: 27 NAAIWKDVANRLGRSNRRTAEVNLSDIARYANADET----VLVPGKVLSNGDLTE--KVN 80
Query: 375 VAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQ 497
VAA ++KA+ +I +AGGE ++ D + P G +++
Sbjct: 81 VAAFKFSQKAQEKIESAGGECVSIDDIMESNPKGSNIRIME 121
>UniRef50_UPI0000D56F37 Cluster: PREDICTED: similar to CG4917-PA,
isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG4917-PA, isoform A - Tribolium castaneum
Length = 838
Score = 33.1 bits (72), Expect = 5.0
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 436 FLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALLQ 546
FL + L ++++A RQ W +ML+ CVTL+ LQ
Sbjct: 455 FLYMFIPLLLVKIASRQDWKGTYQMLIPHCVTLSWLQ 491
>UniRef50_Q8PW46 Cluster: 50S ribosomal protein L18e; n=16;
Euryarchaeota|Rep: 50S ribosomal protein L18e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 126
Score = 33.1 bits (72), Expect = 5.0
Identities = 26/87 (29%), Positives = 44/87 (50%)
Frame = +3
Query: 216 VLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVT 395
+ +RL N +++S++ RH T E + +V G V L P +TVAA+ +
Sbjct: 39 IAKRLEAPSRNYAAVNISKINRH----TAENDVLLVPGKVLG-AGLLDHP-VTVAAVTFS 92
Query: 396 EKARARILAAGGEILTFDQLALRAPTG 476
E A +I AGG+ L+ +++ P G
Sbjct: 93 ESAVEKITEAGGKCLSVEEIMEANPKG 119
>UniRef50_UPI000023CCCF Cluster: hypothetical protein FG07400.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG07400.1 - Gibberella zeae PH-1
Length = 333
Score = 32.7 bits (71), Expect = 6.6
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +3
Query: 399 KARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG----PAPGAPRSHT 566
KA +R G L AP G K Q+N R+ ++ G P P PRS +
Sbjct: 48 KAASRSTNIPGLTLAQSGAPENAPRGPKNGQADSQQNVRKGIKRKGKRHPPEPRKPRSES 107
Query: 567 KPYVRTKG 590
P V +KG
Sbjct: 108 PPKVPSKG 115
>UniRef50_Q4RHJ6 Cluster: Chromosome 19 SCAF15045, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 19
SCAF15045, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 598
Score = 32.7 bits (71), Expect = 6.6
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 545 WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 417
W K T +I+LT Q+CLL R+T + NF+ SS+
Sbjct: 73 WKYFKYTMAPYTIALTPEQHCLLGLRNTGEHFCSTSNFARSSK 115
>UniRef50_Q06035 Cluster: Gag,protease,endonuclease, reverse
transcriptase,RNaseH; n=6; Volvox carteri|Rep:
Gag,protease,endonuclease, reverse transcriptase,RNaseH -
Volvox carteri
Length = 1462
Score = 32.7 bits (71), Expect = 6.6
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = +3
Query: 201 KFNQIVLRRLFMSRINRPPI--SVSRLARHMKKPTRE------GLIAVVVGTVTNDVRLY 356
+F +++ L++S RP I SV LARHM KPT E G++ + GT + +
Sbjct: 1244 RFGELIGSLLYLSVGTRPDIAYSVGALARHMSKPTVEHWQAAKGVVRYIAGTA--GLGIV 1301
Query: 357 KIPKMTVAALH 389
PK + +LH
Sbjct: 1302 FSPKSSNPSLH 1312
>UniRef50_Q0SUG4 Cluster: CRISPR-associated protein Csx8, putative;
n=1; Clostridium perfringens SM101|Rep:
CRISPR-associated protein Csx8, putative - Clostridium
perfringens (strain SM101 / Type A)
Length = 447
Score = 32.3 bits (70), Expect = 8.7
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 455 QLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQ 351
+L KS +F +S+N T+ FGNMK S ++ + V+
Sbjct: 220 ELKKSNSFIENSENTRTTLFGNMKESAEYIGFDVE 254
>UniRef50_Q4UCQ7 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 1007
Score = 32.3 bits (70), Expect = 8.7
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -3
Query: 527 THCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYL 357
+HC + I LT Q CL S S L +F +SS F N + +R+ YL
Sbjct: 598 SHCCSKIPLTTLQECLEKSSSYGEALTDLNSFPNSSTIHLAFIFKNFLNVNRYKYYL 654
>UniRef50_Q22W77 Cluster: EGF-like domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: EGF-like domain
containing protein - Tetrahymena thermophila SB210
Length = 2328
Score = 32.3 bits (70), Expect = 8.7
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Frame = +2
Query: 200 QIQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSHK*RETVQDTEDDGG 379
Q+Q D S + + Y P+TN C+S AP++ + C+ S T +D +
Sbjct: 702 QLQPDNSCACVNQVYDPSTNKCISC-APNQVYDPINKICQNCNPS---CSTCKDASNLNT 757
Query: 380 CSSCYRKSSCTHFGCWRR--NSYF*SAGSSC 466
C+SC + C SYF A C
Sbjct: 758 CTSCPTGKVLYNGNCQDSCPQSYFADANKVC 788
>UniRef50_A1DA31 Cluster: Putative uncharacterized protein; n=1;
Neosartorya fischeri NRRL 181|Rep: Putative
uncharacterized protein - Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
Length = 306
Score = 32.3 bits (70), Expect = 8.7
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 278 RQTRHRDWWPVDTAHKEP 225
RQ+ DWWP D HKEP
Sbjct: 179 RQSTKPDWWPSDVPHKEP 196
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,488,667
Number of Sequences: 1657284
Number of extensions: 13140924
Number of successful extensions: 38625
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 37272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38578
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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