BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10i22f (592 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 191 4e-49 05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 190 5e-49 03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 175 3e-44 01_06_0579 + 30379243-30379617 29 2.1 06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 2.8 09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774... 29 3.7 11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 4.8 11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.4 12_01_0255 + 1888193-1888914,1890247-1890460,1890535-1890615,189... 27 8.5 11_01_0257 + 1972111-1972832,1974214-1974427,1974502-1974582,197... 27 8.5 02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 8.5 >07_03_1667 + 28484069-28484071,28484151-28484240,28484339-28484491, 28484575-28484757,28486137-28486295 Length = 195 Score = 191 bits (465), Expect = 4e-49 Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 7/178 (3%) Frame = +3 Query: 78 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 254 MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60 Query: 255 PISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 416 P+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120 Query: 417 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590 + AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKG 178 >05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684, 3170814-3170999,3172001-3172159 Length = 188 Score = 190 bits (464), Expect = 5e-49 Identities = 96/172 (55%), Positives = 121/172 (70%), Gaps = 1/172 (0%) Frame = +3 Query: 78 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 254 MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60 Query: 255 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 434 P+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE Sbjct: 61 PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119 Query: 435 ILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590 LTFDQLALRAP G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+KG Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKG 171 >03_02_0954 - 12687373-12687582,12688885-12689067,12689160-12689288, 12689375-12689464,12689548-12689550 Length = 204 Score = 175 bits (425), Expect = 3e-44 Identities = 96/189 (50%), Positives = 122/189 (64%), Gaps = 18/189 (9%) Frame = +3 Query: 78 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 254 MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60 Query: 255 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 434 P+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE Sbjct: 61 PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118 Query: 435 ILTFDQLALRAPTGKKT-----------------VLVQGQRNAREAVRHFGPAPGAPRSH 563 LTFDQLALRAP G+ T VL++G +NAREAV+HFGPAPG P S+ Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSN 178 Query: 564 TKPYVRTKG 590 TKPYVR+KG Sbjct: 179 TKPYVRSKG 187 >01_06_0579 + 30379243-30379617 Length = 124 Score = 29.5 bits (63), Expect = 2.1 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = -2 Query: 357 CTVSRHL*LSPLPRQSNPHELASS 286 CT+S H SP+ R S+PH LASS Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31 >06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274, 9046375-9046498,9047237-9047289,9047388-9047648, 9047795-9047848,9047975-9048458,9048554-9048592 Length = 772 Score = 29.1 bits (62), Expect = 2.8 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -1 Query: 328 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 224 P TTA KP RV F + + K D E+ G L L+++R Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711 >09_06_0121 + 20975132-20975755,20976834-20976977,20977333-20977457, 20978090-20978194,20978755-20978989 Length = 410 Score = 28.7 bits (61), Expect = 3.7 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +3 Query: 195 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 371 N K N VL L +S+ + P ++V L H + P +V+GT T+D + + Sbjct: 21 NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79 Query: 372 TVAALHVTEKARARILAAGGEI 437 AAL + + A AAGG + Sbjct: 80 ADAALPLPPRLAAAAAAAGGAV 101 >11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147, 4079256-4079409,4079438-4079494,4080733-4080811, 4081013-4081094,4081168-4081223,4081310-4081492 Length = 348 Score = 28.3 bits (60), Expect = 4.8 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -3 Query: 425 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 327 SS ++ SF + SS+RHL L+ + + CP Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128 >11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086, 4568612-4568887 Length = 287 Score = 27.9 bits (59), Expect = 6.4 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +1 Query: 439 LLLISWLFVLRLARRQYWYKVSEML 513 LL+++WLFV+ RR W +V E+L Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166 >12_01_0255 + 1888193-1888914,1890247-1890460,1890535-1890615, 1890753-1890842,1890950-1891036,1891553-1891653, 1891966-1892011,1892366-1892440,1892557-1892640, 1892721-1892936,1893216-1893358,1893488-1893629 Length = 666 Score = 27.5 bits (58), Expect = 8.5 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -2 Query: 72 QPEEKETIDNRTEYPRYIKMFDS 4 QP E + NR + P Y+++FD+ Sbjct: 74 QPRRPEYVPNRIDDPNYVRIFDT 96 >11_01_0257 + 1972111-1972832,1974214-1974427,1974502-1974582, 1974720-1974809,1974911-1974997,1975484-1975584, 1975892-1975937,1976272-1976346,1976459-1976542, 1976620-1976861,1977067-1977258,1977391-1977532 Length = 691 Score = 27.5 bits (58), Expect = 8.5 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -2 Query: 72 QPEEKETIDNRTEYPRYIKMFDS 4 QP E + NR + P Y+++FD+ Sbjct: 74 QPRRPEYVPNRIDDPNYVRIFDT 96 >02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 Length = 518 Score = 27.5 bits (58), Expect = 8.5 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +3 Query: 321 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 461 ++G++ DV I + VAA+ V + R + GG +L Q+A+ Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,255,866 Number of Sequences: 37544 Number of extensions: 382923 Number of successful extensions: 1107 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1077 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1104 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1400060088 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -