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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10i22f
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   191   4e-49
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   190   5e-49
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   175   3e-44
01_06_0579 + 30379243-30379617                                         29   2.1  
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904...    29   2.8  
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774...    29   3.7  
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407...    28   4.8  
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    28   6.4  
12_01_0255 + 1888193-1888914,1890247-1890460,1890535-1890615,189...    27   8.5  
11_01_0257 + 1972111-1972832,1974214-1974427,1974502-1974582,197...    27   8.5  
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797     27   8.5  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  191 bits (465), Expect = 4e-49
 Identities = 97/178 (54%), Positives = 125/178 (70%), Gaps = 7/178 (3%)
 Frame = +3

Query: 78  MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 254
           MGID +    ++K +RT  +S+D+               T + FN ++L+RLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60

Query: 255 PISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARI 416
           P+S+ RL R M  K P R  +    IAV+VGTVT+D R+Y++P M VAAL  TE ARARI
Sbjct: 61  PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARI 120

Query: 417 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590
           + AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG
Sbjct: 121 INAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKG 178


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  190 bits (464), Expect = 5e-49
 Identities = 96/172 (55%), Positives = 121/172 (70%), Gaps = 1/172 (0%)
 Frame = +3

Query: 78  MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 254
           MGID +    ++K +RT  +S D+               T + FN ++L+RLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60

Query: 255 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 434
           P+S+ RLA+ M+    E  IAV+VGTVT+D R+ +IPKM V AL  TE ARARI+ AGGE
Sbjct: 61  PLSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGE 119

Query: 435 ILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 590
            LTFDQLALRAP G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+KG
Sbjct: 120 CLTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKG 171


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  175 bits (425), Expect = 3e-44
 Identities = 96/189 (50%), Positives = 122/189 (64%), Gaps = 18/189 (9%)
 Frame = +3

Query: 78  MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 254
           MGID +    ++K +RT  KS D+               T + FN ++LRRLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60

Query: 255 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGE 434
           P+S+ RL R M+   +E  IAV+VGTVT+D R+Y++P M VAAL  TE ARARI+  GGE
Sbjct: 61  PLSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGE 118

Query: 435 ILTFDQLALRAPTGKKT-----------------VLVQGQRNAREAVRHFGPAPGAPRSH 563
            LTFDQLALRAP G+ T                 VL++G +NAREAV+HFGPAPG P S+
Sbjct: 119 CLTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSN 178

Query: 564 TKPYVRTKG 590
           TKPYVR+KG
Sbjct: 179 TKPYVRSKG 187


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 357 CTVSRHL*LSPLPRQSNPHELASS 286
           CT+S H   SP+ R S+PH LASS
Sbjct: 11  CTISCH---SPMRRSSSPHRLASS 31


>06_01_1101 -
           9044679-9045320,9045484-9045890,9046020-9046274,
           9046375-9046498,9047237-9047289,9047388-9047648,
           9047795-9047848,9047975-9048458,9048554-9048592
          Length = 772

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 328 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 224
           P TTA KP RV F + +  K D E+ G L  L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711


>09_06_0121 +
           20975132-20975755,20976834-20976977,20977333-20977457,
           20978090-20978194,20978755-20978989
          Length = 410

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 195 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 371
           N K N  VL  L +S+ +  P ++V  L  H + P       +V+GT T+D     +  +
Sbjct: 21  NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79

Query: 372 TVAALHVTEKARARILAAGGEI 437
             AAL +  +  A   AAGG +
Sbjct: 80  ADAALPLPPRLAAAAAAAGGAV 101


>11_01_0520 +
           4078075-4078198,4078726-4078957,4079068-4079147,
           4079256-4079409,4079438-4079494,4080733-4080811,
           4081013-4081094,4081168-4081223,4081310-4081492
          Length = 348

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 425 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 327
           SS ++  SF  +  SS+RHL  L+ +  +  CP
Sbjct: 96  SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128


>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 439 LLLISWLFVLRLARRQYWYKVSEML 513
           LL+++WLFV+   RR  W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166


>12_01_0255 +
           1888193-1888914,1890247-1890460,1890535-1890615,
           1890753-1890842,1890950-1891036,1891553-1891653,
           1891966-1892011,1892366-1892440,1892557-1892640,
           1892721-1892936,1893216-1893358,1893488-1893629
          Length = 666

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 72  QPEEKETIDNRTEYPRYIKMFDS 4
           QP   E + NR + P Y+++FD+
Sbjct: 74  QPRRPEYVPNRIDDPNYVRIFDT 96


>11_01_0257 +
           1972111-1972832,1974214-1974427,1974502-1974582,
           1974720-1974809,1974911-1974997,1975484-1975584,
           1975892-1975937,1976272-1976346,1976459-1976542,
           1976620-1976861,1977067-1977258,1977391-1977532
          Length = 691

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 72  QPEEKETIDNRTEYPRYIKMFDS 4
           QP   E + NR + P Y+++FD+
Sbjct: 74  QPRRPEYVPNRIDDPNYVRIFDT 96


>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
          Length = 518

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 321 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 461
           ++G++  DV    I  + VAA+ V  + R  +   GG +L   Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,255,866
Number of Sequences: 37544
Number of extensions: 382923
Number of successful extensions: 1107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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