BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10i21r (367 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719... 133 5e-32 02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 59 1e-09 04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 57 5e-09 04_04_0303 + 24269467-24270741 31 0.21 02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 3.4 03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668... 27 4.5 08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345... 27 6.0 04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 27 6.0 06_03_0784 - 24557089-24557198,24557296-24560725 26 7.9 06_01_0462 - 3285667-3288123 26 7.9 02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318... 26 7.9 01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 26 7.9 >04_03_0487 + 16471538-16471540,16471694-16471795,16471880-16471908, 16472619-16472745 Length = 86 Score = 133 bits (321), Expect = 5e-32 Identities = 58/78 (74%), Positives = 65/78 (83%) Frame = -2 Query: 324 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 145 IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LC Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66 Query: 144 QPTGGRARLTEGCSFRRK 91 QPTGG+ARLTEGCSFRRK Sbjct: 67 QPTGGKARLTEGCSFRRK 84 >02_03_0220 + 16545571-16545573,16545717-16545818,16545980-16546008, 16549421-16553036 Length = 1249 Score = 58.8 bits (136), Expect = 1e-09 Identities = 26/46 (56%), Positives = 32/46 (69%) Frame = -2 Query: 324 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 187 IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ ++ F A Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52 >04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590 Length = 45 Score = 56.8 bits (131), Expect = 5e-09 Identities = 24/39 (61%), Positives = 29/39 (74%) Frame = -2 Query: 324 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 208 IDLL+P E+ KHK KRLV PNS+FMDVKC GC+ + Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45 >04_04_0303 + 24269467-24270741 Length = 424 Score = 31.5 bits (68), Expect = 0.21 Identities = 22/68 (32%), Positives = 32/68 (47%) Frame = -2 Query: 327 AIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 148 A+ LLHP L ++PH S +D CP Y+I ++ RVV C+++ Sbjct: 148 AVRLLHPFTGDTAELPPLGTVLPHLGSRLLD--CPAPYRIRSL----ARVV----CASVS 197 Query: 147 CQPTGGRA 124 C TG A Sbjct: 198 CSATGAGA 205 >02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353, 3064395-3064559 Length = 670 Score = 27.5 bits (58), Expect = 3.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = -2 Query: 345 AVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSH 190 AV L L+ + ASERRK K+ L N + + YK V SH Sbjct: 51 AVPRSLEAKLMVKTLASERRKRKVNNLERKGNKVDVSIAANDYYKPRAVKSH 102 >03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351, 6688410-6688589 Length = 136 Score = 27.1 bits (57), Expect = 4.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 219 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 127 CYKI+ ++SH Q ++ C IL +PTG R Sbjct: 96 CYKISKIYSHGQSLL----CLDIL-RPTGRR 121 >08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609, 3455930-3456043,3456474-3456531 Length = 165 Score = 26.6 bits (56), Expect = 6.0 Identities = 13/42 (30%), Positives = 18/42 (42%) Frame = -2 Query: 255 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 130 PN + C GC + ++ V CA CST+ P G Sbjct: 18 PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58 Score = 26.6 bits (56), Expect = 6.0 Identities = 11/29 (37%), Positives = 15/29 (51%) Frame = -2 Query: 189 AQRVVVCAGCSTILCQPTGGRARLTEGCS 103 AQ +VC+GC +L P G + CS Sbjct: 21 AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49 >04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987, 8883234-8884060 Length = 572 Score = 26.6 bits (56), Expect = 6.0 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 342 VTMPLAIDLLHPSPASERRKHK 277 +T P DL + +PA++RR+HK Sbjct: 98 LTQPFPADLPNNAPAAQRREHK 119 >06_03_0784 - 24557089-24557198,24557296-24560725 Length = 1179 Score = 26.2 bits (55), Expect = 7.9 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 351 IKAVTMPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVK 229 ++ +T+P + HP S H L+ L HP+S FMD + Sbjct: 617 LRCLTLP---NTNHPLSDSLCSLHHLRMLSVHPHSCFMDTR 654 >06_01_0462 - 3285667-3288123 Length = 818 Score = 26.2 bits (55), Expect = 7.9 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -3 Query: 71 LDRALFNFKIFFPIV*WSDIFQV 3 LDR LF++ FP++ WS + + Sbjct: 614 LDRLLFDYHNLFPVLKWSQRYNI 636 >02_05_1346 - 35831261-35831371,35831609-35831779,35831850-35831888, 35831987-35832049,35832616-35832679,35832709-35832778, 35832866-35832934,35833101-35833186,35833670-35833800, 35834021-35834083,35834166-35834211,35834542-35834618, 35834690-35834724,35835480-35835542,35835632-35835719, 35836027-35836077,35836201-35836269 Length = 431 Score = 26.2 bits (55), Expect = 7.9 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 277 LMFPPLRRRGRMQQINCERHGYSFNAQ 357 L FPP G Q C++HG F+A+ Sbjct: 207 LYFPPPHNIGMQQSDICKKHGKYFSAK 233 >01_05_0607 + 23619271-23619426,23619479-23619552,23619917-23620594, 23620711-23620815,23620877-23621003,23621613-23621773, 23621858-23622028,23622195-23622324,23622532-23622747, 23626821-23627348 Length = 781 Score = 26.2 bits (55), Expect = 7.9 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +1 Query: 193 TKNCCNLVTARALNIHEIRVRMWH*PLKLMFPPLRRRGRMQQINCERHGYS 345 T +CC + A L+ E RV + PL+++ L RG + Q+N G S Sbjct: 679 TAHCCFICRAGVLSAGECRVAVGVDPLEVL-DRLPDRGAVHQMNRREAGNS 728 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,920,798 Number of Sequences: 37544 Number of extensions: 182352 Number of successful extensions: 450 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 442 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 450 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 564709324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -